Hb_002213_090

Information

Type -
Description -
Location Contig2213: 151448-164347
Sequence    

Annotation

kegg
ID rcu:RCOM_0867590
description reticulon3-A3, putative
nr
ID XP_012079766.1
description PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
swissprot
ID Q9FXA7
description UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 OS=Arabidopsis thaliana GN=RGXT3 PE=1 SV=1
trembl
ID A0A067K5R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15383 PE=4 SV=1
Gene Ontology
ID GO:0005768
description xyloglucanase 113 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002213_090 0.0 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
2 Hb_003626_050 0.0848769845 - - malic enzyme, putative [Ricinus communis]
3 Hb_000157_070 0.1006626317 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
4 Hb_001780_150 0.1142676024 - - ceramidase, putative [Ricinus communis]
5 Hb_002477_040 0.1156417527 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]
6 Hb_135959_010 0.1168567274 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
7 Hb_107298_010 0.1175511377 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
8 Hb_001500_070 0.1181342529 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001227_100 0.1193869031 - - RecName: Full=Enolase 1; AltName: Full=2-phospho-D-glycerate hydro-lyase 1; AltName: Full=2-phosphoglycerate dehydratase 1; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
10 Hb_000684_360 0.1206628765 transcription factor TF Family: AP2 hypothetical protein JCGZ_16454 [Jatropha curcas]
11 Hb_001497_060 0.1209983079 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
12 Hb_069619_010 0.1225898812 - - Aspartic proteinase precursor, putative [Ricinus communis]
13 Hb_020805_180 0.1231612131 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
14 Hb_132101_010 0.1268283392 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
15 Hb_002851_010 0.1281461687 - - sugar transporter, putative [Ricinus communis]
16 Hb_004837_280 0.1282876772 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
17 Hb_000723_010 0.1303114779 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_002808_020 0.131588097 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
19 Hb_002026_070 0.1317291069 - - hypothetical protein PHAVU_002G2910001g, partial [Phaseolus vulgaris]
20 Hb_075315_010 0.1356246051 - - ornithine aminotransferase [Camellia sinensis]

Gene co-expression network

sample Hb_002213_090 Hb_002213_090 Hb_003626_050 Hb_003626_050 Hb_002213_090--Hb_003626_050 Hb_000157_070 Hb_000157_070 Hb_002213_090--Hb_000157_070 Hb_001780_150 Hb_001780_150 Hb_002213_090--Hb_001780_150 Hb_002477_040 Hb_002477_040 Hb_002213_090--Hb_002477_040 Hb_135959_010 Hb_135959_010 Hb_002213_090--Hb_135959_010 Hb_107298_010 Hb_107298_010 Hb_002213_090--Hb_107298_010 Hb_003626_050--Hb_000157_070 Hb_003626_050--Hb_107298_010 Hb_000505_100 Hb_000505_100 Hb_003626_050--Hb_000505_100 Hb_001500_070 Hb_001500_070 Hb_003626_050--Hb_001500_070 Hb_006829_100 Hb_006829_100 Hb_003626_050--Hb_006829_100 Hb_000157_070--Hb_135959_010 Hb_020805_180 Hb_020805_180 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_000395_220 Hb_000395_220 Hb_001780_150--Hb_000395_220 Hb_011287_010 Hb_011287_010 Hb_001780_150--Hb_011287_010 Hb_075315_010 Hb_075315_010 Hb_001780_150--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_001780_150--Hb_007426_140 Hb_001780_150--Hb_002851_010 Hb_000227_040 Hb_000227_040 Hb_001780_150--Hb_000227_040 Hb_002686_310 Hb_002686_310 Hb_002477_040--Hb_002686_310 Hb_002928_200 Hb_002928_200 Hb_002477_040--Hb_002928_200 Hb_002477_040--Hb_002851_010 Hb_000723_010 Hb_000723_010 Hb_002477_040--Hb_000723_010 Hb_002477_040--Hb_135959_010 Hb_135959_010--Hb_002851_010 Hb_135959_010--Hb_020805_180 Hb_158845_060 Hb_158845_060 Hb_135959_010--Hb_158845_060 Hb_002027_190 Hb_002027_190 Hb_135959_010--Hb_002027_190 Hb_007747_170 Hb_007747_170 Hb_135959_010--Hb_007747_170 Hb_004837_280 Hb_004837_280 Hb_107298_010--Hb_004837_280 Hb_005489_140 Hb_005489_140 Hb_107298_010--Hb_005489_140 Hb_001900_100 Hb_001900_100 Hb_107298_010--Hb_001900_100 Hb_000159_120 Hb_000159_120 Hb_107298_010--Hb_000159_120 Hb_001019_050 Hb_001019_050 Hb_107298_010--Hb_001019_050 Hb_003777_290 Hb_003777_290 Hb_107298_010--Hb_003777_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74521 3.13733 3.27036 6.04272 1.87141 3.39184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19857 1.25822 0.700372 11.2429 4.12813

CAGE analysis