Hb_002214_040

Information

Type -
Description -
Location Contig2214: 66068-77628
Sequence    

Annotation

kegg
ID rcu:RCOM_0657260
description tryptophanyl-tRNA synthetase, putative (EC:6.1.1.2)
nr
ID XP_012066271.1
description PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q5R4J1
description Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2
trembl
ID A0A067LFL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23836 PE=3 SV=1
Gene Ontology
ID GO:0005829
description tryptophan--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22846: 66208-67848 , PASA_asmbl_22850: 77297-77501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002214_040 0.0 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_000529_190 0.040310719 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
3 Hb_000832_140 0.0537543534 - - actin depolymerizing factor 4 [Hevea brasiliensis]
4 Hb_118707_030 0.055890708 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
5 Hb_002477_070 0.0597908389 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_009838_080 0.0601319982 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_000815_040 0.0605809219 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
8 Hb_063716_050 0.0617021956 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
9 Hb_003050_080 0.0619374832 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_012725_050 0.0648637283 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
11 Hb_000926_250 0.0671037149 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
12 Hb_001604_080 0.0678170466 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
13 Hb_001811_050 0.0678404363 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
14 Hb_001821_010 0.0697487051 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_008878_030 0.0705338098 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
16 Hb_000046_280 0.0720276999 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
17 Hb_006541_030 0.0722319161 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
18 Hb_000103_560 0.0727537686 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_002686_020 0.0745368431 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
20 Hb_000056_200 0.0746063758 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002214_040 Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_063716_050 Hb_063716_050 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000529_190--Hb_000832_140 Hb_000174_090 Hb_000174_090 Hb_000832_140--Hb_000174_090 Hb_003050_080 Hb_003050_080 Hb_000832_140--Hb_003050_080 Hb_000832_140--Hb_000103_560 Hb_000832_140--Hb_063716_050 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_118707_030--Hb_000815_040 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_009838_080--Hb_000107_620 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_000815_040--Hb_001604_080 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000815_040--Hb_000103_560 Hb_000815_040--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4398 3.0517 6.33001 5.47586 11.1497 14.408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4135 18.3911 12.1675 7.81462 6.19253

CAGE analysis