Hb_002214_050

Information

Type -
Description -
Location Contig2214: 84957-89398
Sequence    

Annotation

kegg
ID rcu:RCOM_0846690
description phosphatidylinositol synthase, putative (EC:2.7.8.11)
nr
ID XP_012081784.1
description PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
swissprot
ID Q8LBA6
description CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PIS1 PE=1 SV=2
trembl
ID A0A067K0J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18829 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable cdp-diacylglycerol--inositol 3-phosphatidyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22852: 85171-87736
cDNA
(Sanger)
(ID:Location)		 011_D07.ab1: 87550-90506 , 024_K13.ab1: 89049-90504 , 031_E19.ab1: 89031-90506

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002214_050 0.0 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
2 Hb_010172_030 0.0738044837 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
3 Hb_001437_220 0.0790143491 - - Transmembrane protein, putative [Ricinus communis]
4 Hb_004994_260 0.0818378443 - - Remorin, putative [Ricinus communis]
5 Hb_000333_090 0.0901183899 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
6 Hb_000362_210 0.0910702981 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
7 Hb_000907_090 0.0923027086 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001687_040 0.0926216564 - - actin-depolymerizing factor [Hevea brasiliensis]
9 Hb_084849_020 0.098522151 - - ARF GTPase activator, putative [Ricinus communis]
10 Hb_002660_160 0.099035148 - - protein binding protein, putative [Ricinus communis]
11 Hb_000046_260 0.1020074506 - - acyl carrier protein, putative [Ricinus communis]
12 Hb_000364_020 0.1021409128 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
13 Hb_000120_750 0.1027533229 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
14 Hb_000172_030 0.1035647609 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
15 Hb_011161_050 0.1042678251 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
16 Hb_000212_260 0.1045077111 - - acyl-carrier-protein [Triadica sebifera]
17 Hb_002571_020 0.1050504599 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
18 Hb_000045_190 0.1059234372 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
19 Hb_001080_080 0.1061145244 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
20 Hb_010344_040 0.1062048795 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]

Gene co-expression network

sample Hb_002214_050 Hb_002214_050 Hb_010172_030 Hb_010172_030 Hb_002214_050--Hb_010172_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_000333_090 Hb_000333_090 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_010172_030--Hb_000362_210 Hb_010172_030--Hb_000333_090 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_003050_230 Hb_003050_230 Hb_001437_220--Hb_003050_230 Hb_001437_220--Hb_010172_030 Hb_001437_220--Hb_000333_090 Hb_004994_260--Hb_000907_090 Hb_007926_060 Hb_007926_060 Hb_004994_260--Hb_007926_060 Hb_010344_040 Hb_010344_040 Hb_004994_260--Hb_010344_040 Hb_000722_040 Hb_000722_040 Hb_004994_260--Hb_000722_040 Hb_023386_010 Hb_023386_010 Hb_004994_260--Hb_023386_010 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000333_090--Hb_000362_210 Hb_100777_010 Hb_100777_010 Hb_000333_090--Hb_100777_010 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_000362_210--Hb_084849_020 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_004738_010 Hb_004738_010 Hb_000907_090--Hb_004738_010 Hb_162275_030 Hb_162275_030 Hb_000907_090--Hb_162275_030 Hb_000907_090--Hb_010344_040 Hb_002735_060 Hb_002735_060 Hb_000907_090--Hb_002735_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.3253 6.60808 10.2173 27.958 22.7592 55.882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.406 97.1413 58.6361 13.3475 10.9691

CAGE analysis