Hb_002215_020

Information

Type -
Description -
Location Contig2215: 27471-27716
Sequence    

Annotation

kegg
ID pop:POPTR_0014s15480g
description hypothetical protein
nr
ID KDP30785.1
description hypothetical protein JCGZ_13728 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002215_020 0.0 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
2 Hb_003607_040 0.0573676629 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_000012_340 0.07659168 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
4 Hb_103942_020 0.0940583646 - - unknown [Zea mays]
5 Hb_002186_190 0.0966536792 - - -
6 Hb_001454_030 0.0976531644 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
7 Hb_000816_170 0.0989437274 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
8 Hb_005539_330 0.1018594007 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
9 Hb_000296_030 0.1040783108 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
10 Hb_001804_020 0.1045665585 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
11 Hb_116679_010 0.1053949554 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
12 Hb_001157_120 0.1058499206 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_006889_010 0.1058820108 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
14 Hb_000083_260 0.1061237207 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007441_320 0.1065614635 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
16 Hb_000358_070 0.1083337547 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
17 Hb_000331_660 0.1098847929 - - PREDICTED: vignain [Jatropha curcas]
18 Hb_001597_040 0.1103582771 - - -
19 Hb_009470_010 0.1131270951 - - -
20 Hb_001141_260 0.1143101862 - - Uncharacterized protein TCM_020647 [Theobroma cacao]

Gene co-expression network

sample Hb_002215_020 Hb_002215_020 Hb_003607_040 Hb_003607_040 Hb_002215_020--Hb_003607_040 Hb_000012_340 Hb_000012_340 Hb_002215_020--Hb_000012_340 Hb_103942_020 Hb_103942_020 Hb_002215_020--Hb_103942_020 Hb_002186_190 Hb_002186_190 Hb_002215_020--Hb_002186_190 Hb_001454_030 Hb_001454_030 Hb_002215_020--Hb_001454_030 Hb_000816_170 Hb_000816_170 Hb_002215_020--Hb_000816_170 Hb_116679_010 Hb_116679_010 Hb_003607_040--Hb_116679_010 Hb_003607_040--Hb_000012_340 Hb_000358_070 Hb_000358_070 Hb_003607_040--Hb_000358_070 Hb_003607_040--Hb_000816_170 Hb_029508_050 Hb_029508_050 Hb_003607_040--Hb_029508_050 Hb_000012_340--Hb_000816_170 Hb_001401_130 Hb_001401_130 Hb_000012_340--Hb_001401_130 Hb_001123_080 Hb_001123_080 Hb_000012_340--Hb_001123_080 Hb_005539_330 Hb_005539_330 Hb_000012_340--Hb_005539_330 Hb_000012_340--Hb_002186_190 Hb_103942_020--Hb_001454_030 Hb_007441_320 Hb_007441_320 Hb_103942_020--Hb_007441_320 Hb_000628_080 Hb_000628_080 Hb_103942_020--Hb_000628_080 Hb_103942_020--Hb_003607_040 Hb_103942_020--Hb_000012_340 Hb_103942_020--Hb_002186_190 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_002186_190--Hb_001401_130 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_009470_010 Hb_009470_010 Hb_002186_190--Hb_009470_010 Hb_001454_030--Hb_007441_320 Hb_001454_030--Hb_000628_080 Hb_001634_070 Hb_001634_070 Hb_001454_030--Hb_001634_070 Hb_001454_030--Hb_002186_190 Hb_001454_030--Hb_003607_040 Hb_000816_170--Hb_000358_070 Hb_001232_170 Hb_001232_170 Hb_000816_170--Hb_001232_170 Hb_000243_240 Hb_000243_240 Hb_000816_170--Hb_000243_240 Hb_001343_060 Hb_001343_060 Hb_000816_170--Hb_001343_060 Hb_000201_060 Hb_000201_060 Hb_000816_170--Hb_000201_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.02776 0.841554 52.4905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.984064 1.40834

CAGE analysis