Hb_002215_050

Information

Type -
Description -
Location Contig2215: 40373-51249
Sequence    

Annotation

kegg
ID rcu:RCOM_1116380
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_002525315.1
description protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
swissprot
ID Q9LVE2
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform OS=Arabidopsis thaliana GN=B'ZETA PE=2 SV=2
trembl
ID B9SH46
description Protein phosphatase 2a, regulatory subunit, putative OS=Ricinus communis GN=RCOM_1116380 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 59 kda regulatory subunit b gamma isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22859: 40444-51365 , PASA_asmbl_22860: 46483-46793
cDNA
(Sanger)
(ID:Location)		 002_O24.ab1: 49712-50438 , 013_C21.ab1: 50814-51315 , 046_G10.ab1: 49693-50438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002215_050 0.0 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
2 Hb_001369_060 0.0505890312 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
3 Hb_003638_140 0.0667313129 - - protein binding protein, putative [Ricinus communis]
4 Hb_033491_010 0.0724235724 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
5 Hb_000784_090 0.0735755023 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
6 Hb_001214_130 0.0772877188 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
7 Hb_024714_030 0.0777433101 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
8 Hb_001047_020 0.0788075267 - - -
9 Hb_002014_080 0.0792389316 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
10 Hb_001840_080 0.0796825319 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
11 Hb_000608_120 0.079750439 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
12 Hb_003494_240 0.0797569079 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
13 Hb_000365_360 0.082142045 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_001030_120 0.084095212 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_002686_270 0.0857346947 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006447_010 0.0860442936 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
17 Hb_014568_030 0.0875039145 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
18 Hb_000703_090 0.0878259129 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
19 Hb_000386_040 0.0904967912 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_000359_170 0.091104566 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]

Gene co-expression network

sample Hb_002215_050 Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_003638_140 Hb_003638_140 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_001369_060--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001804_060 Hb_001804_060 Hb_001369_060--Hb_001804_060 Hb_001369_060--Hb_003638_140 Hb_098709_010 Hb_098709_010 Hb_001369_060--Hb_098709_010 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_003638_140--Hb_001804_060 Hb_000732_260 Hb_000732_260 Hb_033491_010--Hb_000732_260 Hb_000272_100 Hb_000272_100 Hb_033491_010--Hb_000272_100 Hb_000282_060 Hb_000282_060 Hb_033491_010--Hb_000282_060 Hb_033491_010--Hb_000784_090 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001493_100 Hb_001493_100 Hb_000784_090--Hb_001493_100 Hb_000784_090--Hb_001369_060 Hb_028639_060 Hb_028639_060 Hb_001214_130--Hb_028639_060 Hb_003642_060 Hb_003642_060 Hb_001214_130--Hb_003642_060 Hb_000905_190 Hb_000905_190 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.678 34.3972 12.8482 23.0993 85.9805 139.108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.158 62.7453 78.2019 18.4124 16.5891

CAGE analysis