Hb_002216_040

Information

Type -
Description -
Location Contig2216: 32953-40121
Sequence    

Annotation

kegg
ID rcu:RCOM_1648550
description hypothetical protein
nr
ID XP_012078523.1
description PREDICTED: protein PRD1 [Jatropha curcas]
swissprot
ID O23277
description Protein PRD1 OS=Arabidopsis thaliana GN=PRD1 PE=1 SV=3
trembl
ID A0A067K8X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13122 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22861: 33302-34418 , PASA_asmbl_22862: 34824-35092 , PASA_asmbl_22863: 35253-35779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002216_040 0.0 - - PREDICTED: protein PRD1 [Jatropha curcas]
2 Hb_000503_050 0.0621078625 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
3 Hb_005699_070 0.0634363456 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
4 Hb_002685_020 0.085920964 - - -
5 Hb_000834_270 0.0868753316 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
6 Hb_000010_470 0.0916823761 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
7 Hb_004678_050 0.0924417919 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
8 Hb_014720_080 0.0937486143 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
9 Hb_000613_140 0.0952739536 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
10 Hb_000429_170 0.0964444208 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
11 Hb_012022_030 0.0967387072 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
12 Hb_000111_360 0.0975954117 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004993_050 0.0976664353 - - -
14 Hb_006400_030 0.0981582868 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
15 Hb_003976_010 0.0985185366 - - methionine aminopeptidase, putative [Ricinus communis]
16 Hb_000174_070 0.0990552287 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
17 Hb_002301_230 0.1002920759 - - hypothetical protein JCGZ_21466 [Jatropha curcas]
18 Hb_005618_170 0.1004131641 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_000010_460 0.1020930967 - - hypothetical protein EUGRSUZ_B001502, partial [Eucalyptus grandis]
20 Hb_155764_010 0.1021908746 - - -

Gene co-expression network

sample Hb_002216_040 Hb_002216_040 Hb_000503_050 Hb_000503_050 Hb_002216_040--Hb_000503_050 Hb_005699_070 Hb_005699_070 Hb_002216_040--Hb_005699_070 Hb_002685_020 Hb_002685_020 Hb_002216_040--Hb_002685_020 Hb_000834_270 Hb_000834_270 Hb_002216_040--Hb_000834_270 Hb_000010_470 Hb_000010_470 Hb_002216_040--Hb_000010_470 Hb_004678_050 Hb_004678_050 Hb_002216_040--Hb_004678_050 Hb_000503_050--Hb_005699_070 Hb_014720_080 Hb_014720_080 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_002056_060 Hb_002056_060 Hb_000503_050--Hb_002056_060 Hb_000503_050--Hb_000834_270 Hb_126643_020 Hb_126643_020 Hb_005699_070--Hb_126643_020 Hb_002105_040 Hb_002105_040 Hb_005699_070--Hb_002105_040 Hb_005618_170 Hb_005618_170 Hb_005699_070--Hb_005618_170 Hb_002685_010 Hb_002685_010 Hb_005699_070--Hb_002685_010 Hb_026527_030 Hb_026527_030 Hb_002685_020--Hb_026527_030 Hb_019253_020 Hb_019253_020 Hb_002685_020--Hb_019253_020 Hb_002685_020--Hb_004678_050 Hb_000300_640 Hb_000300_640 Hb_002685_020--Hb_000300_640 Hb_000116_440 Hb_000116_440 Hb_002685_020--Hb_000116_440 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_002963_010 Hb_002963_010 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_148209_110 Hb_148209_110 Hb_000010_470--Hb_148209_110 Hb_155764_010 Hb_155764_010 Hb_000010_470--Hb_155764_010 Hb_000010_460 Hb_000010_460 Hb_000010_470--Hb_000010_460 Hb_000010_470--Hb_004678_050 Hb_006400_030 Hb_006400_030 Hb_000010_470--Hb_006400_030 Hb_001360_050 Hb_001360_050 Hb_004678_050--Hb_001360_050 Hb_000025_120 Hb_000025_120 Hb_004678_050--Hb_000025_120 Hb_004678_050--Hb_012675_060 Hb_004678_050--Hb_000834_270 Hb_020419_010 Hb_020419_010 Hb_004678_050--Hb_020419_010 Hb_003020_230 Hb_003020_230 Hb_004678_050--Hb_003020_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03926 2.08627 0.9474 1.71765 3.01183 3.08291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.96526 5.45427 5.85638 3.79064 1.16633

CAGE analysis