Hb_002217_020

Information

Type -
Description -
Location Contig2217: 9115-14061
Sequence    

Annotation

kegg
ID rcu:RCOM_1002710
description yth domain-containing protein, putative
nr
ID XP_012084159.1
description PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
swissprot
ID Q9BYJ9
description YTH domain-containing family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
trembl
ID A0A067JYU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19063 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22865: 9224-11110 , PASA_asmbl_22866: 11121-13909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_020 0.0 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
2 Hb_022250_060 0.0801161451 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
3 Hb_007317_010 0.0844183403 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003657_010 0.0887762461 - - conserved hypothetical protein [Ricinus communis]
5 Hb_136509_010 0.0899443101 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
6 Hb_001856_200 0.0930377879 - - Esterase PIR7B, putative [Ricinus communis]
7 Hb_000164_020 0.097692124 - - actin binding protein, putative [Ricinus communis]
8 Hb_004208_030 0.0983614513 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
9 Hb_005545_100 0.1000201617 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
10 Hb_001825_060 0.1001306941 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
11 Hb_000926_090 0.1014408004 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
12 Hb_000039_160 0.1015122237 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
13 Hb_001314_070 0.1021052903 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022256_020 0.104389078 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
15 Hb_004117_260 0.1068102313 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000221_190 0.1077558517 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
17 Hb_000465_230 0.1078623462 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
18 Hb_001635_190 0.108518308 - - RNA m5u methyltransferase, putative [Ricinus communis]
19 Hb_000465_300 0.108911465 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
20 Hb_000309_130 0.1089344429 - - hypothetical protein JCGZ_09592 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_020 Hb_002217_020 Hb_022250_060 Hb_022250_060 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_022250_060--Hb_007317_010 Hb_000221_190 Hb_000221_190 Hb_022250_060--Hb_000221_190 Hb_000926_090 Hb_000926_090 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_007317_010--Hb_000926_090 Hb_007317_010--Hb_000221_190 Hb_010578_080 Hb_010578_080 Hb_007317_010--Hb_010578_080 Hb_002754_010 Hb_002754_010 Hb_007317_010--Hb_002754_010 Hb_004117_260 Hb_004117_260 Hb_003657_010--Hb_004117_260 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_001159_110 Hb_001159_110 Hb_136509_010--Hb_001159_110 Hb_005545_100 Hb_005545_100 Hb_136509_010--Hb_005545_100 Hb_004453_050 Hb_004453_050 Hb_136509_010--Hb_004453_050 Hb_001633_210 Hb_001633_210 Hb_136509_010--Hb_001633_210 Hb_003349_090 Hb_003349_090 Hb_136509_010--Hb_003349_090 Hb_001825_060 Hb_001825_060 Hb_001856_200--Hb_001825_060 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_141990_040 Hb_141990_040 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_001246_110 Hb_001246_110 Hb_000164_020--Hb_001246_110 Hb_000342_060 Hb_000342_060 Hb_000164_020--Hb_000342_060 Hb_000869_080 Hb_000869_080 Hb_000164_020--Hb_000869_080 Hb_000164_020--Hb_004208_030 Hb_001766_060 Hb_001766_060 Hb_000164_020--Hb_001766_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0928 23.6544 19.5585 13.6907 7.50943 10.0177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3822 24.4669 30.2178 12.9278 10.8081

CAGE analysis