Hb_002217_030

Information

Type -
Description -
Location Contig2217: 20723-28115
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16200g
description POPTRDRAFT_226043; hypothetical protein
nr
ID XP_012084156.1
description PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
swissprot
ID Q9M548
description DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1
trembl
ID A0A067JVR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19062 PE=4 SV=1
Gene Ontology
ID GO:0006306
description dna (cytosine-5)-methyltransferase drm2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22867: 20867-28236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_030 0.0 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
2 Hb_003464_080 0.0562019344 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_000200_120 0.0640999957 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
4 Hb_000182_040 0.0685438988 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
5 Hb_001232_010 0.0698438603 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
6 Hb_001860_030 0.0761761155 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
7 Hb_001235_140 0.0764417645 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
8 Hb_002681_090 0.0783673327 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
9 Hb_143629_110 0.0792574724 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
10 Hb_001157_090 0.0799329855 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
11 Hb_028872_090 0.0812040683 - - PREDICTED: urease [Jatropha curcas]
12 Hb_006569_030 0.081573296 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
13 Hb_002784_020 0.0827253598 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
14 Hb_007657_020 0.0846329859 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
15 Hb_000089_120 0.0846840965 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001178_070 0.0863444673 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
17 Hb_000120_280 0.0873633666 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
18 Hb_133702_030 0.0900950841 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
19 Hb_002477_090 0.0911052539 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
20 Hb_001761_130 0.0922267767 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_030 Hb_002217_030 Hb_003464_080 Hb_003464_080 Hb_002217_030--Hb_003464_080 Hb_000200_120 Hb_000200_120 Hb_002217_030--Hb_000200_120 Hb_000182_040 Hb_000182_040 Hb_002217_030--Hb_000182_040 Hb_001232_010 Hb_001232_010 Hb_002217_030--Hb_001232_010 Hb_001860_030 Hb_001860_030 Hb_002217_030--Hb_001860_030 Hb_001235_140 Hb_001235_140 Hb_002217_030--Hb_001235_140 Hb_000089_120 Hb_000089_120 Hb_003464_080--Hb_000089_120 Hb_003464_080--Hb_000200_120 Hb_143629_110 Hb_143629_110 Hb_003464_080--Hb_143629_110 Hb_116349_070 Hb_116349_070 Hb_003464_080--Hb_116349_070 Hb_001635_090 Hb_001635_090 Hb_003464_080--Hb_001635_090 Hb_001178_070 Hb_001178_070 Hb_000200_120--Hb_001178_070 Hb_000116_410 Hb_000116_410 Hb_000200_120--Hb_000116_410 Hb_000200_120--Hb_001860_030 Hb_000200_120--Hb_143629_110 Hb_133702_030 Hb_133702_030 Hb_000182_040--Hb_133702_030 Hb_007657_020 Hb_007657_020 Hb_000182_040--Hb_007657_020 Hb_000182_040--Hb_000089_120 Hb_000120_280 Hb_000120_280 Hb_000182_040--Hb_000120_280 Hb_000398_080 Hb_000398_080 Hb_000182_040--Hb_000398_080 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_001232_010--Hb_143629_110 Hb_000062_270 Hb_000062_270 Hb_001860_030--Hb_000062_270 Hb_028512_020 Hb_028512_020 Hb_001860_030--Hb_028512_020 Hb_013399_020 Hb_013399_020 Hb_001860_030--Hb_013399_020 Hb_000981_030 Hb_000981_030 Hb_001860_030--Hb_000981_030 Hb_004324_130 Hb_004324_130 Hb_001860_030--Hb_004324_130 Hb_001860_030--Hb_001635_090 Hb_010053_030 Hb_010053_030 Hb_001235_140--Hb_010053_030 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000505_020 Hb_000505_020 Hb_001235_140--Hb_000505_020 Hb_001235_140--Hb_000089_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58348 5.35636 4.99544 5.99315 7.19273 6.98694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.07535 4.37934 4.14883 11.1008 3.51345

CAGE analysis