Hb_002217_060

Information

Type -
Description -
Location Contig2217: 41093-43727
Sequence    

Annotation

kegg
ID rcu:RCOM_1002690
description Polygalacturonase precursor, putative (EC:3.2.1.67)
nr
ID XP_012084150.1
description PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
swissprot
ID Q949Z1
description Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1
trembl
ID A0A067K827
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19059 PE=3 SV=1
Gene Ontology
ID GO:0004650
description polygalacturonase at1g48100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22872: 41173-43227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_060 0.0 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
2 Hb_023771_030 0.0980730779 - - unnamed protein product [Vitis vinifera]
3 Hb_001284_070 0.0997647302 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003592_060 0.1014897846 - - hypothetical protein F383_11017 [Gossypium arboreum]
5 Hb_020273_010 0.1043193934 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
6 Hb_001310_060 0.1090122219 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_002851_070 0.1123760191 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
8 Hb_001369_550 0.1140163677 - - 21 kDa protein precursor, putative [Ricinus communis]
9 Hb_000205_180 0.1199366221 - - lipoxygenase, putative [Ricinus communis]
10 Hb_080147_070 0.1215688354 - - Rop5 [Hevea brasiliensis]
11 Hb_005743_010 0.1218321091 - - RING/U-box superfamily protein, putative [Theobroma cacao]
12 Hb_068804_070 0.1224522015 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
13 Hb_000359_180 0.1360680411 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000018_120 0.1361312416 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_006916_130 0.1387383014 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
16 Hb_000941_010 0.13884236 - - hypothetical protein RCOM_0504460 [Ricinus communis]
17 Hb_004446_060 0.1407540953 - - neutral/alkaline invertase [Manihot esculenta]
18 Hb_017358_050 0.1417971076 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
19 Hb_004832_010 0.1420170465 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009693_010 0.1423433967 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]

Gene co-expression network

sample Hb_002217_060 Hb_002217_060 Hb_023771_030 Hb_023771_030 Hb_002217_060--Hb_023771_030 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_003592_060 Hb_003592_060 Hb_002217_060--Hb_003592_060 Hb_020273_010 Hb_020273_010 Hb_002217_060--Hb_020273_010 Hb_001310_060 Hb_001310_060 Hb_002217_060--Hb_001310_060 Hb_002851_070 Hb_002851_070 Hb_002217_060--Hb_002851_070 Hb_023771_030--Hb_002851_070 Hb_006916_130 Hb_006916_130 Hb_023771_030--Hb_006916_130 Hb_012813_020 Hb_012813_020 Hb_023771_030--Hb_012813_020 Hb_009693_010 Hb_009693_010 Hb_023771_030--Hb_009693_010 Hb_023771_030--Hb_003592_060 Hb_001284_070--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_001284_070--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001284_070--Hb_004607_020 Hb_002700_030 Hb_002700_030 Hb_001284_070--Hb_002700_030 Hb_000205_180 Hb_000205_180 Hb_001284_070--Hb_000205_180 Hb_001369_550 Hb_001369_550 Hb_001284_070--Hb_001369_550 Hb_006266_010 Hb_006266_010 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_003592_060--Hb_009693_010 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_020273_010--Hb_000205_180 Hb_020273_010--Hb_012813_020 Hb_020273_010--Hb_001310_060 Hb_020273_010--Hb_023771_030 Hb_020273_010--Hb_001369_550 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_000205_180 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_002851_070--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_002851_070--Hb_000880_040 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_004446_060 Hb_004446_060 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.113876 1.40756 42.0722 15.4534 0.0583052 0.0269006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0225433 0.0177378 0.0336373 21.3256 10.7214

CAGE analysis