Hb_002217_070

Information

Type -
Description -
Location Contig2217: 47356-93616
Sequence    

Annotation

kegg
ID rcu:RCOM_1002480
description vacuolar protein sorting-associated protein, putative
nr
ID XP_012084149.1
description PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
swissprot
ID Q54LB8
description Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1
trembl
ID B9RZX0
description Vacuolar protein sorting-associated protein, putative OS=Ricinus communis GN=RCOM_1002480 PE=4 SV=1
Gene Ontology
ID GO:0005515
description vacuolar protein sorting-associated

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22873: 47453-52766 , PASA_asmbl_22874: 52788-54102 , PASA_asmbl_22875: 55606-55937 , PASA_asmbl_22877: 57402-58515 , PASA_asmbl_22878: 58650-67318 , PASA_asmbl_22879: 58651-67052 , PASA_asmbl_22880: 67651-68973 , PASA_asmbl_22881: 69174-73807 , PASA_asmbl_22883: 73876-75596 , PASA_asmbl_22884: 76274-79773 , PASA_asmbl_22885: 82867-84606 , PASA_asmbl_22886: 82857-83115 , PASA_asmbl_22887: 86507-86886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_070 0.0 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
2 Hb_004605_020 0.1166395375 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
3 Hb_073973_020 0.1372169699 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
4 Hb_002218_070 0.1435247454 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
5 Hb_003517_100 0.144825587 transcription factor TF Family: GRAS -
6 Hb_000522_010 0.1457541003 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
7 Hb_000847_010 0.1469541643 - - PREDICTED: uncharacterized protein LOC102608064 [Citrus sinensis]
8 Hb_061908_020 0.1482096025 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_000264_340 0.1505272169 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
10 Hb_042202_020 0.1513459463 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
11 Hb_001268_300 0.1528964851 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003106_210 0.1529485894 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
13 Hb_002609_130 0.1532274763 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
14 Hb_010261_030 0.1540028754 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_000032_020 0.1540805214 - - Centromeric protein E, putative [Ricinus communis]
16 Hb_001357_360 0.1549656769 - - zinc finger protein, putative [Ricinus communis]
17 Hb_002600_010 0.1550136106 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
18 Hb_000417_410 0.156007714 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
19 Hb_000141_010 0.1570675233 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
20 Hb_002420_010 0.1589051472 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_002217_070 Hb_002217_070 Hb_004605_020 Hb_004605_020 Hb_002217_070--Hb_004605_020 Hb_073973_020 Hb_073973_020 Hb_002217_070--Hb_073973_020 Hb_002218_070 Hb_002218_070 Hb_002217_070--Hb_002218_070 Hb_003517_100 Hb_003517_100 Hb_002217_070--Hb_003517_100 Hb_000522_010 Hb_000522_010 Hb_002217_070--Hb_000522_010 Hb_000847_010 Hb_000847_010 Hb_002217_070--Hb_000847_010 Hb_061908_020 Hb_061908_020 Hb_004605_020--Hb_061908_020 Hb_027337_030 Hb_027337_030 Hb_004605_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_001307_200 Hb_001307_200 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_003517_100--Hb_001268_300 Hb_003517_100--Hb_000522_010 Hb_003517_100--Hb_002888_040 Hb_000365_220 Hb_000365_220 Hb_003517_100--Hb_000365_220 Hb_003517_100--Hb_000417_410 Hb_008494_090 Hb_008494_090 Hb_003517_100--Hb_008494_090 Hb_000522_010--Hb_008494_090 Hb_000522_010--Hb_000365_220 Hb_000522_010--Hb_000417_410 Hb_000522_010--Hb_002888_040 Hb_000522_010--Hb_004605_020 Hb_004126_030 Hb_004126_030 Hb_000847_010--Hb_004126_030 Hb_000847_010--Hb_002609_130 Hb_000800_010 Hb_000800_010 Hb_000847_010--Hb_000800_010 Hb_005305_030 Hb_005305_030 Hb_000847_010--Hb_005305_030 Hb_013405_100 Hb_013405_100 Hb_000847_010--Hb_013405_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254948 15.291 3.55174 5.88111 0.34682 0.360099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.51513 0.906274 0.813084 9.51335 11.7415

CAGE analysis