Hb_002217_110

Information

Type -
Description -
Location Contig2217: 129635-132133
Sequence    

Annotation

kegg
ID rcu:RCOM_1002440
description Craniofacial development protein, putative
nr
ID XP_012084145.1
description PREDICTED: craniofacial development protein 1 [Jatropha curcas]
swissprot
ID Q75QI0
description Craniofacial development protein 1 OS=Gallus gallus GN=CFDP1 PE=2 SV=1
trembl
ID A0A067K6S7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19055 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22897: 129716-132128 , PASA_asmbl_22898: 129727-132110 , PASA_asmbl_22899: 130302-130408
cDNA
(Sanger)
(ID:Location)		 022_K16.ab1: 130789-132128

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_110 0.0 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
2 Hb_004837_180 0.0531647133 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
3 Hb_000260_680 0.0617552829 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
4 Hb_001456_060 0.0621923879 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
5 Hb_012384_030 0.0633330304 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
6 Hb_003929_280 0.0635029492 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
7 Hb_001776_060 0.0642111343 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
8 Hb_009659_050 0.0649275418 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
9 Hb_000866_410 0.0655894372 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
10 Hb_004236_050 0.0676950556 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
11 Hb_007590_020 0.0689545607 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
12 Hb_003001_080 0.0691263073 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
13 Hb_014834_150 0.0713588642 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_008453_140 0.0730046445 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
15 Hb_000340_400 0.0731558265 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_001821_160 0.0733502748 - - serine/arginine rich splicing factor, putative [Ricinus communis]
17 Hb_005867_070 0.0736141797 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000339_040 0.0741430527 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
19 Hb_000331_110 0.0745188368 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
20 Hb_003927_040 0.0748533024 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002217_110 Hb_002217_110 Hb_004837_180 Hb_004837_180 Hb_002217_110--Hb_004837_180 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_012384_030 Hb_012384_030 Hb_002217_110--Hb_012384_030 Hb_003929_280 Hb_003929_280 Hb_002217_110--Hb_003929_280 Hb_001776_060 Hb_001776_060 Hb_002217_110--Hb_001776_060 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_000260_680--Hb_001776_060 Hb_000331_110 Hb_000331_110 Hb_000260_680--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_000260_680--Hb_079526_030 Hb_001153_210 Hb_001153_210 Hb_000260_680--Hb_001153_210 Hb_005779_010 Hb_005779_010 Hb_000260_680--Hb_005779_010 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_000339_040 Hb_000339_040 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_004052_080 Hb_004052_080 Hb_001456_060--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_001456_060--Hb_002876_230 Hb_001456_060--Hb_005867_070 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_012384_030--Hb_001776_060 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_012384_030--Hb_003929_280 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_003929_280--Hb_004236_050 Hb_003929_280--Hb_003927_040 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.8481 31.6597 35.3041 21.9031 30.8563 23.8602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.5988 34.4384 16.8441 19.8566 25.6814

CAGE analysis