Hb_002217_130

Information

Type -
Description -
Location Contig2217: 136360-137858
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16020g
description POPTRDRAFT_805284; galactinol synthase family protein
nr
ID AHI44615.1
description galactinol synthase-1 [Manihot esculenta]
swissprot
ID O22893
description Galactinol synthase 1 OS=Arabidopsis thaliana GN=GOLS1 PE=1 SV=1
trembl
ID W5ZSG7
description Hexosyltransferase OS=Manihot esculenta GN=GolS1 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22900: 136372-137386 , PASA_asmbl_22901: 137673-137816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_130 0.0 - - galactinol synthase-1 [Manihot esculenta]
2 Hb_001741_100 0.1234410793 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
3 Hb_002234_220 0.1592829304 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
4 Hb_001892_160 0.1890200615 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
5 Hb_000161_100 0.1941054819 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
6 Hb_000007_310 0.195382792 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
7 Hb_000200_060 0.1999991225 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
8 Hb_156144_020 0.2017092262 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
9 Hb_005568_070 0.2054162443 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
10 Hb_000580_060 0.2089754214 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
11 Hb_075570_010 0.2100668224 - - -
12 Hb_000153_020 0.2121750407 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027998_030 0.2128040252 - - laccase, putative [Ricinus communis]
14 Hb_132629_010 0.212821426 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_171554_020 0.2183575032 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
16 Hb_003494_260 0.2226507957 - - -
17 Hb_177627_010 0.2258841161 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_000176_060 0.2262103499 - - unnamed protein product [Vitis vinifera]
19 Hb_002124_020 0.2271186867 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
20 Hb_000252_090 0.2300926753 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_130 Hb_002217_130 Hb_001741_100 Hb_001741_100 Hb_002217_130--Hb_001741_100 Hb_002234_220 Hb_002234_220 Hb_002217_130--Hb_002234_220 Hb_001892_160 Hb_001892_160 Hb_002217_130--Hb_001892_160 Hb_000161_100 Hb_000161_100 Hb_002217_130--Hb_000161_100 Hb_000007_310 Hb_000007_310 Hb_002217_130--Hb_000007_310 Hb_000200_060 Hb_000200_060 Hb_002217_130--Hb_000200_060 Hb_001741_100--Hb_002234_220 Hb_001741_100--Hb_001892_160 Hb_001741_100--Hb_000200_060 Hb_156144_020 Hb_156144_020 Hb_001741_100--Hb_156144_020 Hb_001741_100--Hb_000007_310 Hb_002124_020 Hb_002124_020 Hb_002234_220--Hb_002124_020 Hb_000605_010 Hb_000605_010 Hb_002234_220--Hb_000605_010 Hb_002234_220--Hb_000200_060 Hb_073212_010 Hb_073212_010 Hb_002234_220--Hb_073212_010 Hb_001892_160--Hb_156144_020 Hb_171554_020 Hb_171554_020 Hb_001892_160--Hb_171554_020 Hb_001892_160--Hb_000007_310 Hb_132629_010 Hb_132629_010 Hb_001892_160--Hb_132629_010 Hb_000153_020 Hb_000153_020 Hb_001892_160--Hb_000153_020 Hb_177627_010 Hb_177627_010 Hb_001892_160--Hb_177627_010 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_000007_310--Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_000007_310--Hb_075570_010 Hb_000007_310--Hb_177627_010 Hb_003494_260 Hb_003494_260 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_000007_310--Hb_000153_040 Hb_134732_010 Hb_134732_010 Hb_000200_060--Hb_134732_010 Hb_000200_060--Hb_002124_020 Hb_000200_060--Hb_000007_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
186.958 13.7664 4.39269 3.79888 174.884 159.696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70037 0.691353 0.179518 0.119711 23.0192

CAGE analysis