Hb_002217_220

Information

Type -
Description -
Location Contig2217: 245152-250004
Sequence    

Annotation

kegg
ID vvi:100241487
description beta-glucosidase-like SFR2, chloroplastic
nr
ID XP_006378553.1
description hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
swissprot
ID Q8L6H7
description Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1
trembl
ID U5FYZ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15930g PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase-like chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22914: 245278-245433 , PASA_asmbl_22916: 246416-250136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_220 0.0 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]
2 Hb_000260_660 0.0569357202 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007765_030 0.0793892006 - - PREDICTED: neutral ceramidase [Jatropha curcas]
4 Hb_011287_010 0.081337699 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_000395_220 0.0922202974 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_083799_010 0.1016792021 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_007426_140 0.1079670519 - - ornithine aminotransferase, putative [Ricinus communis]
8 Hb_000174_140 0.1102406656 - - JHL23J11.8 [Jatropha curcas]
9 Hb_000080_110 0.1147212097 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
10 Hb_002631_200 0.1154385746 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
11 Hb_001414_040 0.1162217774 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
12 Hb_001167_050 0.1167664721 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
13 Hb_062416_010 0.1172829096 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
14 Hb_000009_120 0.1202121562 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
15 Hb_002027_190 0.1204936349 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
16 Hb_143629_100 0.121079414 - - PREDICTED: phytochrome A [Jatropha curcas]
17 Hb_000571_160 0.1214937465 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
18 Hb_001268_120 0.1217175177 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000997_180 0.122242443 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001031_090 0.1224398147 - - PREDICTED: translational activator GCN1 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_220 Hb_002217_220 Hb_000260_660 Hb_000260_660 Hb_002217_220--Hb_000260_660 Hb_007765_030 Hb_007765_030 Hb_002217_220--Hb_007765_030 Hb_011287_010 Hb_011287_010 Hb_002217_220--Hb_011287_010 Hb_000395_220 Hb_000395_220 Hb_002217_220--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_002217_220--Hb_083799_010 Hb_007426_140 Hb_007426_140 Hb_002217_220--Hb_007426_140 Hb_000260_660--Hb_007765_030 Hb_000260_660--Hb_083799_010 Hb_009615_160 Hb_009615_160 Hb_000260_660--Hb_009615_160 Hb_005074_020 Hb_005074_020 Hb_000260_660--Hb_005074_020 Hb_006006_040 Hb_006006_040 Hb_000260_660--Hb_006006_040 Hb_001414_040 Hb_001414_040 Hb_007765_030--Hb_001414_040 Hb_001341_160 Hb_001341_160 Hb_007765_030--Hb_001341_160 Hb_000220_120 Hb_000220_120 Hb_007765_030--Hb_000220_120 Hb_000834_230 Hb_000834_230 Hb_007765_030--Hb_000834_230 Hb_011287_010--Hb_000395_220 Hb_000227_040 Hb_000227_040 Hb_011287_010--Hb_000227_040 Hb_011287_010--Hb_000260_660 Hb_001642_070 Hb_001642_070 Hb_011287_010--Hb_001642_070 Hb_012760_040 Hb_012760_040 Hb_011287_010--Hb_012760_040 Hb_000395_220--Hb_007426_140 Hb_000395_220--Hb_083799_010 Hb_009732_020 Hb_009732_020 Hb_000395_220--Hb_009732_020 Hb_001780_150 Hb_001780_150 Hb_000395_220--Hb_001780_150 Hb_002272_170 Hb_002272_170 Hb_000395_220--Hb_002272_170 Hb_083799_010--Hb_002272_170 Hb_075315_010 Hb_075315_010 Hb_083799_010--Hb_075315_010 Hb_005081_020 Hb_005081_020 Hb_083799_010--Hb_005081_020 Hb_083799_010--Hb_007426_140 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99598 15.5944 5.56272 10.9532 4.74638 4.68863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14322 4.66182 4.85068 17.5631 5.31235

CAGE analysis