Hb_002217_230

Information

Type -
Description -
Location Contig2217: 251013-253602
Sequence    

Annotation

kegg
ID rcu:RCOM_1001830
description RNA binding protein, putative
nr
ID XP_012084134.1
description PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RZV5
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_1001830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22916: 246416-250136 , PASA_asmbl_22917: 252075-252204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_230 0.0 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
2 Hb_032208_060 0.1185044176 - - PREDICTED: constitutive photomorphogenesis protein 10 isoform X2 [Populus euphratica]
3 Hb_004672_010 0.123398588 - - ecotropic viral integration site, putative [Ricinus communis]
4 Hb_001638_230 0.1241548495 - - RNA-binding region-containing protein, putative [Ricinus communis]
5 Hb_000896_040 0.1246619675 - - BnaC02g13240D [Brassica napus]
6 Hb_004931_100 0.127785514 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
7 Hb_005285_030 0.1290250877 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
8 Hb_003462_120 0.1304260947 - - Acidic endochitinase [Theobroma cacao]
9 Hb_002849_200 0.1309115524 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
10 Hb_004128_110 0.1313386307 - - glutathione S-transferase L3-like [Jatropha curcas]
11 Hb_005137_060 0.133688102 - - -
12 Hb_000820_090 0.1346023974 - - -
13 Hb_000340_320 0.1365416548 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
14 Hb_000417_260 0.1376924445 - - protein with unknown function [Ricinus communis]
15 Hb_001005_080 0.1377150913 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_001481_140 0.1386991019 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
17 Hb_000413_280 0.1412085716 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
18 Hb_001519_030 0.1430459774 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
19 Hb_001054_100 0.1431503973 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
20 Hb_000934_190 0.1441749568 - - SER/ARG-rich protein 34A [Theobroma cacao]

Gene co-expression network

sample Hb_002217_230 Hb_002217_230 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_004931_100 Hb_004931_100 Hb_002217_230--Hb_004931_100 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_001663_050 Hb_001663_050 Hb_032208_060--Hb_001663_050 Hb_012114_040 Hb_012114_040 Hb_032208_060--Hb_012114_040 Hb_028515_010 Hb_028515_010 Hb_032208_060--Hb_028515_010 Hb_005568_120 Hb_005568_120 Hb_032208_060--Hb_005568_120 Hb_001481_140 Hb_001481_140 Hb_032208_060--Hb_001481_140 Hb_005883_100 Hb_005883_100 Hb_032208_060--Hb_005883_100 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000417_260 Hb_000417_260 Hb_004672_010--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050 Hb_158092_010 Hb_158092_010 Hb_001638_230--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_189216_030 Hb_189216_030 Hb_001638_230--Hb_189216_030 Hb_003098_020 Hb_003098_020 Hb_000896_040--Hb_003098_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000896_040--Hb_000417_260 Hb_091433_020 Hb_091433_020 Hb_000896_040--Hb_091433_020 Hb_000896_040--Hb_004672_010 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_004128_110 Hb_004128_110 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003442_070 Hb_003442_070 Hb_005285_030--Hb_003442_070 Hb_003462_120 Hb_003462_120 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_028487_170 Hb_028487_170 Hb_005285_030--Hb_028487_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.357697 0.172665 0.384552 0.85965 0.218868 0.299114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1695 1.19063 1.31739 1.2112 0.169207

CAGE analysis