Hb_002217_250

Information

Type -
Description -
Location Contig2217: 258834-264919
Sequence    

Annotation

kegg
ID rcu:RCOM_1001800
description hypothetical protein
nr
ID XP_002519271.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6Y2X3
description DnaJ homolog subfamily C member 14 OS=Homo sapiens GN=DNAJC14 PE=2 SV=2
trembl
ID B9RZV2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1001800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22921: 258905-264816 , PASA_asmbl_22922: 260190-261779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007645_100 0.0614797183 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
3 Hb_002263_020 0.0639031867 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
4 Hb_000347_430 0.0661361764 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
5 Hb_003517_040 0.0684117007 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
6 Hb_002732_040 0.0736986265 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
7 Hb_000340_530 0.0746063531 - - hypothetical protein VITISV_016664 [Vitis vinifera]
8 Hb_000138_100 0.0758941503 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
9 Hb_005867_070 0.0761409318 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002374_370 0.0766359569 - - protein with unknown function [Ricinus communis]
11 Hb_000327_270 0.0776995509 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
12 Hb_000958_140 0.0782802617 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
13 Hb_021443_040 0.0782968573 - - acc synthase, putative [Ricinus communis]
14 Hb_000441_090 0.0798429859 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
15 Hb_000708_030 0.0800598764 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
16 Hb_005730_040 0.0808620249 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
17 Hb_002849_130 0.0814231737 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
18 Hb_000975_040 0.081733812 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
19 Hb_000258_070 0.0818628343 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
20 Hb_007590_020 0.0824366456 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_250 Hb_002217_250 Hb_007645_100 Hb_007645_100 Hb_002217_250--Hb_007645_100 Hb_002263_020 Hb_002263_020 Hb_002217_250--Hb_002263_020 Hb_000347_430 Hb_000347_430 Hb_002217_250--Hb_000347_430 Hb_003517_040 Hb_003517_040 Hb_002217_250--Hb_003517_040 Hb_002732_040 Hb_002732_040 Hb_002217_250--Hb_002732_040 Hb_000340_530 Hb_000340_530 Hb_002217_250--Hb_000340_530 Hb_000731_270 Hb_000731_270 Hb_007645_100--Hb_000731_270 Hb_007645_100--Hb_002263_020 Hb_003847_130 Hb_003847_130 Hb_007645_100--Hb_003847_130 Hb_005054_090 Hb_005054_090 Hb_007645_100--Hb_005054_090 Hb_000347_070 Hb_000347_070 Hb_007645_100--Hb_000347_070 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_001902_030 Hb_001902_030 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_002263_020--Hb_003517_040 Hb_004109_080 Hb_004109_080 Hb_002263_020--Hb_004109_080 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_020378_030 Hb_020378_030 Hb_002732_040--Hb_020378_030 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_000327_270 Hb_000327_270 Hb_002732_040--Hb_000327_270 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_000340_530--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1444 25.5547 20.4877 23.7687 29.652 18.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.8191 18.6718 19.2456 23.1798 30.8485

CAGE analysis