Hb_002217_260

Information

Type -
Description -
Location Contig2217: 266534-269833
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10150g
description POPTRDRAFT_564358; REGULATOR OF FATTY-ACID COMPOSITION 3 family protein
nr
ID XP_012084128.1
description PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
swissprot
ID Q0VMF9
description 30S ribosomal protein S6 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rpsF PE=3 SV=1
trembl
ID A0A067K6R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19040 PE=3 SV=1
Gene Ontology
ID GO:0005840
description regulator of fatty-acid composition 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22924: 266560-269730 , PASA_asmbl_22925: 266936-267064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_260 0.0 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
2 Hb_000462_090 0.1002683228 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
3 Hb_001584_200 0.1038412055 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
4 Hb_036790_080 0.1060852638 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
5 Hb_009775_010 0.106682811 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
6 Hb_000080_120 0.106997751 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
7 Hb_021346_030 0.1072094766 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
8 Hb_000087_140 0.1075343009 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
9 Hb_002163_040 0.1089967214 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000627_250 0.1095050524 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
11 Hb_003952_060 0.1124406518 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
12 Hb_000062_260 0.1142053837 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
13 Hb_093458_060 0.1144249573 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
14 Hb_000224_160 0.1145800274 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_002639_140 0.1186703093 - - PREDICTED: 4-coumarate--CoA ligase-like 5 [Jatropha curcas]
16 Hb_006117_040 0.1189087047 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
17 Hb_001259_020 0.1218632112 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
18 Hb_002053_110 0.1227531335 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000130_260 0.1240071786 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
20 Hb_004398_030 0.1255167092 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]

Gene co-expression network

sample Hb_002217_260 Hb_002217_260 Hb_000462_090 Hb_000462_090 Hb_002217_260--Hb_000462_090 Hb_001584_200 Hb_001584_200 Hb_002217_260--Hb_001584_200 Hb_036790_080 Hb_036790_080 Hb_002217_260--Hb_036790_080 Hb_009775_010 Hb_009775_010 Hb_002217_260--Hb_009775_010 Hb_000080_120 Hb_000080_120 Hb_002217_260--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_002217_260--Hb_021346_030 Hb_000462_090--Hb_001584_200 Hb_000173_250 Hb_000173_250 Hb_000462_090--Hb_000173_250 Hb_000340_150 Hb_000340_150 Hb_000462_090--Hb_000340_150 Hb_000172_580 Hb_000172_580 Hb_000462_090--Hb_000172_580 Hb_000462_090--Hb_009775_010 Hb_003376_230 Hb_003376_230 Hb_000462_090--Hb_003376_230 Hb_000224_160 Hb_000224_160 Hb_001584_200--Hb_000224_160 Hb_001584_200--Hb_003376_230 Hb_012022_150 Hb_012022_150 Hb_001584_200--Hb_012022_150 Hb_002374_240 Hb_002374_240 Hb_001584_200--Hb_002374_240 Hb_001584_200--Hb_000172_580 Hb_005253_030 Hb_005253_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_000261_060 Hb_000261_060 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_006538_120 Hb_006538_120 Hb_009775_010--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_009775_010--Hb_000221_140 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_009775_010--Hb_000173_250 Hb_001410_070 Hb_001410_070 Hb_009775_010--Hb_001410_070 Hb_001660_120 Hb_001660_120 Hb_009775_010--Hb_001660_120 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_002893_070 Hb_002893_070 Hb_000080_120--Hb_002893_070 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_000080_120--Hb_012022_150 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3151 11.6461 23.8205 12.5881 22.4955 22.3374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.677 23.2186 21.8042 10.8366 64.2148

CAGE analysis