Hb_002217_270

Information

Type -
Description -
Location Contig2217: 271647-279888
Sequence    

Annotation

kegg
ID cic:CICLE_v10006917mg
description hypothetical protein
nr
ID XP_012084125.1
description PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4TZX2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10006917mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22926: 276069-276317 , PASA_asmbl_22927: 279150-279458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_270 0.0 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
2 Hb_004787_100 0.1147465544 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
3 Hb_136886_010 0.1517369955 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_005568_060 0.1567952729 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
5 Hb_004324_290 0.1576090579 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
6 Hb_000434_050 0.1654250228 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
7 Hb_000015_180 0.166825386 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
8 Hb_000960_010 0.1711781574 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_102100_010 0.177781784 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_003038_010 0.1806703221 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_016404_010 0.1810327802 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_088084_010 0.1832931285 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
13 Hb_000220_090 0.1848674965 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
14 Hb_010589_130 0.1897796386 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
15 Hb_000574_120 0.1902465161 - - conserved hypothetical protein [Ricinus communis]
16 Hb_185080_010 0.1920181345 - - -
17 Hb_006483_050 0.1939182292 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
18 Hb_181824_010 0.1949325446 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_000230_210 0.1965003725 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
20 Hb_015481_010 0.1975880313 transcription factor TF Family: PLATZ unknown [Medicago truncatula]

Gene co-expression network

sample Hb_002217_270 Hb_002217_270 Hb_004787_100 Hb_004787_100 Hb_002217_270--Hb_004787_100 Hb_136886_010 Hb_136886_010 Hb_002217_270--Hb_136886_010 Hb_005568_060 Hb_005568_060 Hb_002217_270--Hb_005568_060 Hb_004324_290 Hb_004324_290 Hb_002217_270--Hb_004324_290 Hb_000434_050 Hb_000434_050 Hb_002217_270--Hb_000434_050 Hb_000015_180 Hb_000015_180 Hb_002217_270--Hb_000015_180 Hb_004787_100--Hb_005568_060 Hb_004787_100--Hb_004324_290 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_006538_030 Hb_006538_030 Hb_004787_100--Hb_006538_030 Hb_000960_010 Hb_000960_010 Hb_136886_010--Hb_000960_010 Hb_127819_010 Hb_127819_010 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_181824_010 Hb_181824_010 Hb_005568_060--Hb_181824_010 Hb_001846_040 Hb_001846_040 Hb_005568_060--Hb_001846_040 Hb_016404_010 Hb_016404_010 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_000574_120 Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_004324_290--Hb_006483_050 Hb_185080_010 Hb_185080_010 Hb_000434_050--Hb_185080_010 Hb_078901_010 Hb_078901_010 Hb_000434_050--Hb_078901_010 Hb_000434_050--Hb_000015_180 Hb_000805_150 Hb_000805_150 Hb_000434_050--Hb_000805_150 Hb_010589_130 Hb_010589_130 Hb_000434_050--Hb_010589_130 Hb_000220_090 Hb_000220_090 Hb_000434_050--Hb_000220_090 Hb_000015_180--Hb_000220_090 Hb_000015_180--Hb_002835_260 Hb_102100_010 Hb_102100_010 Hb_000015_180--Hb_102100_010 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171692 2.07165 0.346127 0.126269 0.0542086 0.0671917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0313252 0.073933 0.046297 0.0196748 0.0515515

CAGE analysis