Hb_002217_290

Information

Type -
Description -
Location Contig2217: 283737-284993
Sequence    

Annotation

kegg
ID pmum:103323218
description desiccation-related protein PCC13-62-like
nr
ID KDP27958.1
description hypothetical protein JCGZ_19038 [Jatropha curcas]
swissprot
ID P22242
description Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1
trembl
ID A0A067JYS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22928: 281512-283084
cDNA
(Sanger)
(ID:Location)		 031_E18.ab1: 281512-282790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_290 0.0 - - hypothetical protein JCGZ_19038 [Jatropha curcas]
2 Hb_000922_210 0.0028416565 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
3 Hb_130507_020 0.1795601983 - - -
4 Hb_001226_190 0.2044701199 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
5 Hb_000668_210 0.2046827106 - - hypothetical protein PHAVU_006G031500g [Phaseolus vulgaris]
6 Hb_001951_160 0.2400899635 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
7 Hb_024404_040 0.2409816744 - - hypothetical protein JCGZ_22351 [Jatropha curcas]
8 Hb_101624_010 0.2508014761 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_005031_010 0.2508080555 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_000749_100 0.2510017256 - - -
11 Hb_002000_120 0.2560649018 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_001623_120 0.2578485526 - - PREDICTED: uncharacterized protein LOC105650382 isoform X2 [Jatropha curcas]
13 Hb_006922_070 0.2630965967 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_005542_170 0.271401116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_002200_100 0.2720703331 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
16 Hb_000788_140 0.2730603127 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033095_050 0.275842351 - - hypothetical protein VITISV_038692 [Vitis vinifera]
18 Hb_002400_430 0.2776943789 - - -
19 Hb_025528_010 0.2870421445 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
20 Hb_002249_200 0.2923820314 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]

Gene co-expression network

sample Hb_002217_290 Hb_002217_290 Hb_000922_210 Hb_000922_210 Hb_002217_290--Hb_000922_210 Hb_130507_020 Hb_130507_020 Hb_002217_290--Hb_130507_020 Hb_001226_190 Hb_001226_190 Hb_002217_290--Hb_001226_190 Hb_000668_210 Hb_000668_210 Hb_002217_290--Hb_000668_210 Hb_001951_160 Hb_001951_160 Hb_002217_290--Hb_001951_160 Hb_024404_040 Hb_024404_040 Hb_002217_290--Hb_024404_040 Hb_000922_210--Hb_130507_020 Hb_000922_210--Hb_000668_210 Hb_000922_210--Hb_001226_190 Hb_000922_210--Hb_001951_160 Hb_000922_210--Hb_024404_040 Hb_130507_020--Hb_000668_210 Hb_130507_020--Hb_024404_040 Hb_007908_010 Hb_007908_010 Hb_130507_020--Hb_007908_010 Hb_130507_020--Hb_001951_160 Hb_003935_010 Hb_003935_010 Hb_001226_190--Hb_003935_010 Hb_002000_120 Hb_002000_120 Hb_001226_190--Hb_002000_120 Hb_001210_100 Hb_001210_100 Hb_001226_190--Hb_001210_100 Hb_006922_070 Hb_006922_070 Hb_001226_190--Hb_006922_070 Hb_002200_100 Hb_002200_100 Hb_000668_210--Hb_002200_100 Hb_001244_030 Hb_001244_030 Hb_000668_210--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_000668_210--Hb_002249_200 Hb_000668_210--Hb_007908_010 Hb_025528_010 Hb_025528_010 Hb_000668_210--Hb_025528_010 Hb_001951_160--Hb_024404_040 Hb_001623_120 Hb_001623_120 Hb_001951_160--Hb_001623_120 Hb_000788_140 Hb_000788_140 Hb_001951_160--Hb_000788_140 Hb_001951_160--Hb_007908_010 Hb_024404_040--Hb_001623_120 Hb_024404_040--Hb_000788_140 Hb_024404_040--Hb_007908_010 Hb_000731_120 Hb_000731_120 Hb_024404_040--Hb_000731_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.043045 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0965631 0 0.0399531 0.182619

CAGE analysis