Hb_002217_300

Information

Type -
Description -
Location Contig2217: 285824-287818
Sequence    

Annotation

kegg
ID rcu:RCOM_1001660
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012084126.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
swissprot
ID Q9M302
description Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
trembl
ID A0A067JVP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19037 PE=4 SV=1
Gene Ontology
ID GO:0048445
description pentatricopeptide repeat-containing protein at3g48810

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_300 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
2 Hb_000832_020 0.0541289549 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
3 Hb_089032_040 0.0629593144 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80550, mitochondrial [Jatropha curcas]
4 Hb_000898_040 0.0693631683 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000185_040 0.0807677374 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
6 Hb_005490_030 0.083900319 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
7 Hb_002740_180 0.0845554585 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001430_070 0.0856651613 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005054_100 0.0869498738 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
10 Hb_002435_120 0.0903186429 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002942_100 0.0905055224 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
12 Hb_004607_050 0.0908014775 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
13 Hb_000086_400 0.0926430156 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000749_220 0.0929696305 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
15 Hb_000032_100 0.0948174175 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
16 Hb_002311_040 0.0960740929 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
17 Hb_000707_050 0.0975810399 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
18 Hb_000796_220 0.0976701481 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
19 Hb_000723_130 0.0977588691 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
20 Hb_002809_050 0.0980620079 - - PREDICTED: protein FIZZY-RELATED 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_300 Hb_002217_300 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000898_040 Hb_000898_040 Hb_002217_300--Hb_000898_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040 Hb_000796_220 Hb_000796_220 Hb_000832_020--Hb_000796_220 Hb_000395_190 Hb_000395_190 Hb_089032_040--Hb_000395_190 Hb_010128_080 Hb_010128_080 Hb_089032_040--Hb_010128_080 Hb_000061_460 Hb_000061_460 Hb_089032_040--Hb_000061_460 Hb_005731_130 Hb_005731_130 Hb_089032_040--Hb_005731_130 Hb_000676_110 Hb_000676_110 Hb_089032_040--Hb_000676_110 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69291 1.26353 0.867503 1.80188 2.65192 2.7849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81049 1.97656 4.38946 2.08284 1.50518

CAGE analysis