Hb_002217_310

Information

Type -
Description -
Location Contig2217: 289733-290736
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10180g
description POPTRDRAFT_720815; hypothetical protein
nr
ID XP_012084121.1
description PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
swissprot
ID Q1ZXH4
description ER membrane protein complex subunit 6 OS=Dictyostelium discoideum GN=emc6 PE=3 SV=1
trembl
ID B9HIL0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s10180g PE=4 SV=1
Gene Ontology
ID GO:0072546
description er membrane protein complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22931: 289190-291521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_310 0.0 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
2 Hb_000069_160 0.0688576819 - - -
3 Hb_141131_010 0.0714122062 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
4 Hb_000849_070 0.082794454 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
5 Hb_001124_210 0.0836745921 - - conserved hypothetical protein [Ricinus communis]
6 Hb_021409_020 0.0858858663 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
7 Hb_003847_080 0.0879403507 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
8 Hb_012305_050 0.0950251969 - - unnamed protein product [Coffea canephora]
9 Hb_004545_060 0.0966448781 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
10 Hb_000620_080 0.096768424 - - hypothetical protein F775_32679 [Aegilops tauschii]
11 Hb_003502_080 0.0976003238 - - vacuolar protein sorting, putative [Ricinus communis]
12 Hb_023001_050 0.0977420029 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_002078_150 0.0989736996 - - protein with unknown function [Ricinus communis]
14 Hb_022250_130 0.100473521 - - inositol hexaphosphate kinase, putative [Ricinus communis]
15 Hb_000229_040 0.1013879507 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
16 Hb_185830_020 0.1031767318 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000080_060 0.1032913044 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
18 Hb_000045_090 0.1033590743 - - PREDICTED: syntaxin-31 [Jatropha curcas]
19 Hb_000510_090 0.1039284467 - - 40S ribosomal protein S15 [Morus notabilis]
20 Hb_050455_010 0.1042110379 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_310 Hb_002217_310 Hb_000069_160 Hb_000069_160 Hb_002217_310--Hb_000069_160 Hb_141131_010 Hb_141131_010 Hb_002217_310--Hb_141131_010 Hb_000849_070 Hb_000849_070 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_003847_080 Hb_003847_080 Hb_002217_310--Hb_003847_080 Hb_050455_010 Hb_050455_010 Hb_000069_160--Hb_050455_010 Hb_002982_040 Hb_002982_040 Hb_000069_160--Hb_002982_040 Hb_000069_160--Hb_003847_080 Hb_000069_160--Hb_000849_070 Hb_003502_080 Hb_003502_080 Hb_000069_160--Hb_003502_080 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_000849_070--Hb_050455_010 Hb_000849_070--Hb_001124_210 Hb_000849_070--Hb_003847_080 Hb_002400_070 Hb_002400_070 Hb_000849_070--Hb_002400_070 Hb_001124_210--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_000229_040 Hb_000229_040 Hb_021409_020--Hb_000229_040 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_021409_020--Hb_003502_080 Hb_000045_090 Hb_000045_090 Hb_021409_020--Hb_000045_090 Hb_003195_060 Hb_003195_060 Hb_021409_020--Hb_003195_060 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_003847_080--Hb_002078_150 Hb_003847_080--Hb_000363_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.5544 38.2709 25.5234 92.8645 103.404 185.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.525 108.949 79.487 49.6562 11.8574

CAGE analysis