Hb_002217_350

Information

Type -
Description -
Location Contig2217: 305248-310140
Sequence    

Annotation

kegg
ID cit:102609701
description importin subunit alpha-1b-like
nr
ID XP_012084120.1
description PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
swissprot
ID O80480
description Importin subunit alpha-4 OS=Arabidopsis thaliana GN=IMPA4 PE=1 SV=1
trembl
ID A0A067K804
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_19034 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22938: 308951-309540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_350 0.0 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
2 Hb_000853_150 0.0712773609 - - Fumarase 1 isoform 2 [Theobroma cacao]
3 Hb_000783_010 0.0836129785 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
4 Hb_000483_260 0.087140085 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
5 Hb_002205_090 0.0874355174 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
6 Hb_003304_020 0.0889767493 - - Polyadenylate-binding protein RBP47C [Glycine soja]
7 Hb_000720_040 0.0891227798 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
8 Hb_011628_060 0.0891717305 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
9 Hb_000050_200 0.0909719623 - - ergosterol biosynthetic protein 28 [Jatropha curcas]
10 Hb_020025_040 0.0933905734 - - sodium-bile acid cotransporter, putative [Ricinus communis]
11 Hb_001218_030 0.0935263301 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
12 Hb_000200_020 0.0937136553 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
13 Hb_002681_100 0.0948261224 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
14 Hb_005271_040 0.0963853546 - - PREDICTED: serine racemase [Jatropha curcas]
15 Hb_000460_030 0.0972688669 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
16 Hb_000381_120 0.0981734336 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
17 Hb_003994_230 0.098565769 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
18 Hb_005588_060 0.0989920618 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
19 Hb_002014_020 0.0993158839 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_000300_500 0.1013825902 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_350 Hb_002217_350 Hb_000853_150 Hb_000853_150 Hb_002217_350--Hb_000853_150 Hb_000783_010 Hb_000783_010 Hb_002217_350--Hb_000783_010 Hb_000483_260 Hb_000483_260 Hb_002217_350--Hb_000483_260 Hb_002205_090 Hb_002205_090 Hb_002217_350--Hb_002205_090 Hb_003304_020 Hb_003304_020 Hb_002217_350--Hb_003304_020 Hb_000720_040 Hb_000720_040 Hb_002217_350--Hb_000720_040 Hb_003058_120 Hb_003058_120 Hb_000853_150--Hb_003058_120 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_005588_060 Hb_005588_060 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_000076_220 Hb_000076_220 Hb_000853_150--Hb_000076_220 Hb_000510_300 Hb_000510_300 Hb_000783_010--Hb_000510_300 Hb_000200_020 Hb_000200_020 Hb_000783_010--Hb_000200_020 Hb_001366_370 Hb_001366_370 Hb_000783_010--Hb_001366_370 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_000236_040 Hb_000236_040 Hb_002205_090--Hb_000236_040 Hb_004070_020 Hb_004070_020 Hb_002205_090--Hb_004070_020 Hb_002014_020 Hb_002014_020 Hb_002205_090--Hb_002014_020 Hb_000381_120 Hb_000381_120 Hb_002205_090--Hb_000381_120 Hb_000050_200 Hb_000050_200 Hb_002205_090--Hb_000050_200 Hb_000003_230 Hb_000003_230 Hb_003304_020--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_003304_020--Hb_004058_030 Hb_003582_060 Hb_003582_060 Hb_003304_020--Hb_003582_060 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_003994_230 Hb_003994_230 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_002936_010 Hb_002936_010 Hb_000720_040--Hb_002936_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17565 2.26402 5.50976 5.50261 2.56749 3.35833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93308 5.87671 5.34741 6.0868 1.88225

CAGE analysis