Hb_002217_400

Information

Type -
Description -
Location Contig2217: 334932-335564
Sequence    

Annotation

kegg
ID ath:AT2G36110
description polynucleotidyl transferase, ribonuclease H-like protein
nr
ID NP_181155.1
description polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
swissprot
ID O09053
description Werner syndrome ATP-dependent helicase homolog OS=Mus musculus GN=Wrn PE=1 SV=3
trembl
ID Q9SIH3
description Polynucleotidyl transferase, ribonuclease H-like protein OS=Arabidopsis thaliana GN=At2g36110 PE=4 SV=1
Gene Ontology
ID GO:0003676
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_400 0.0 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
2 Hb_000028_450 0.0100614698 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
3 Hb_003082_090 0.0217978894 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
4 Hb_005357_040 0.028409979 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_000617_160 0.0317558799 - - -
6 Hb_138585_070 0.0323985481 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000732_200 0.0390859208 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005389_030 0.0419698365 - - hypothetical protein VITISV_023348 [Vitis vinifera]
9 Hb_000984_280 0.0597760899 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
10 Hb_180864_010 0.0671921657 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
11 Hb_004598_020 0.0700368162 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
12 Hb_001242_170 0.0701307325 - - conserved hypothetical protein [Ricinus communis]
13 Hb_100953_010 0.0805815641 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
14 Hb_007138_010 0.0861479251 - - PREDICTED: putative laccase-9 [Jatropha curcas]
15 Hb_085600_010 0.0862538208 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
16 Hb_001369_510 0.089165561 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
17 Hb_163989_010 0.0894307663 - - conserved hypothetical protein [Ricinus communis]
18 Hb_070266_010 0.0968936908 - - LRR.XII-like protein, partial [Platanus x acerifolia]
19 Hb_000504_060 0.1003147787 - - Cell division cycle protein cdt2, putative [Ricinus communis]
20 Hb_002641_090 0.102717171 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_400 Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_002217_400--Hb_000028_450 Hb_003082_090 Hb_003082_090 Hb_002217_400--Hb_003082_090 Hb_005357_040 Hb_005357_040 Hb_002217_400--Hb_005357_040 Hb_000617_160 Hb_000617_160 Hb_002217_400--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_002217_400--Hb_138585_070 Hb_000732_200 Hb_000732_200 Hb_002217_400--Hb_000732_200 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_138585_070 Hb_005389_030 Hb_005389_030 Hb_000028_450--Hb_005389_030 Hb_000028_450--Hb_000617_160 Hb_003082_090--Hb_005357_040 Hb_003082_090--Hb_005389_030 Hb_004598_020 Hb_004598_020 Hb_003082_090--Hb_004598_020 Hb_003082_090--Hb_000617_160 Hb_005357_040--Hb_138585_070 Hb_005357_040--Hb_005389_030 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_000732_200 Hb_000617_160--Hb_138585_070 Hb_000617_160--Hb_000732_200 Hb_000984_280 Hb_000984_280 Hb_000617_160--Hb_000984_280 Hb_138585_070--Hb_000732_200 Hb_138585_070--Hb_005389_030 Hb_000732_200--Hb_000984_280 Hb_000732_200--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.160634 0.367383 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0599895 0

CAGE analysis