Hb_002217_470

Information

Type -
Description -
Location Contig2217: 421259-422301
Sequence    

Annotation

kegg
ID rcu:RCOM_1000860
description hypothetical protein
nr
ID XP_012084103.1
description PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19019 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_470 0.0 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
2 Hb_000654_030 0.1393949347 - - -
3 Hb_000023_160 0.1422136897 - - PREDICTED: uncharacterized protein LOC105636423 isoform X1 [Jatropha curcas]
4 Hb_026549_010 0.1474446142 - - -
5 Hb_000317_160 0.1685293806 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
6 Hb_002148_020 0.1734103815 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_034552_030 0.1782520166 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_000029_090 0.1929163448 - - Nicalin precursor, putative [Ricinus communis]
9 Hb_131967_010 0.1973704664 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_004787_110 0.201252969 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001584_260 0.2021090421 - - zinc finger protein, putative [Ricinus communis]
12 Hb_122548_010 0.2023056984 - - acyl-CoA oxidase, putative [Ricinus communis]
13 Hb_002232_320 0.2037061544 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000913_040 0.2040128834 - - Methyltransferase-related protein, putative [Theobroma cacao]
15 Hb_000333_110 0.2054059141 - - conserved hypothetical protein [Ricinus communis]
16 Hb_146868_010 0.2059332624 - - -
17 Hb_001922_050 0.206260242 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
18 Hb_003813_050 0.2074133186 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
19 Hb_004137_100 0.2088743543 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
20 Hb_003464_070 0.2100524663 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_470 Hb_002217_470 Hb_000654_030 Hb_000654_030 Hb_002217_470--Hb_000654_030 Hb_000023_160 Hb_000023_160 Hb_002217_470--Hb_000023_160 Hb_026549_010 Hb_026549_010 Hb_002217_470--Hb_026549_010 Hb_000317_160 Hb_000317_160 Hb_002217_470--Hb_000317_160 Hb_002148_020 Hb_002148_020 Hb_002217_470--Hb_002148_020 Hb_034552_030 Hb_034552_030 Hb_002217_470--Hb_034552_030 Hb_000089_200 Hb_000089_200 Hb_000654_030--Hb_000089_200 Hb_000913_040 Hb_000913_040 Hb_000654_030--Hb_000913_040 Hb_000654_030--Hb_026549_010 Hb_000656_190 Hb_000656_190 Hb_000654_030--Hb_000656_190 Hb_001584_260 Hb_001584_260 Hb_000654_030--Hb_001584_260 Hb_000023_160--Hb_000317_160 Hb_009615_020 Hb_009615_020 Hb_000023_160--Hb_009615_020 Hb_002685_150 Hb_002685_150 Hb_000023_160--Hb_002685_150 Hb_000023_160--Hb_000654_030 Hb_001140_070 Hb_001140_070 Hb_000023_160--Hb_001140_070 Hb_000868_050 Hb_000868_050 Hb_026549_010--Hb_000868_050 Hb_016734_080 Hb_016734_080 Hb_026549_010--Hb_016734_080 Hb_001054_020 Hb_001054_020 Hb_026549_010--Hb_001054_020 Hb_000622_200 Hb_000622_200 Hb_026549_010--Hb_000622_200 Hb_005725_230 Hb_005725_230 Hb_000317_160--Hb_005725_230 Hb_000317_160--Hb_002685_150 Hb_004137_100 Hb_004137_100 Hb_000317_160--Hb_004137_100 Hb_027746_020 Hb_027746_020 Hb_000317_160--Hb_027746_020 Hb_131967_010 Hb_131967_010 Hb_002148_020--Hb_131967_010 Hb_006698_040 Hb_006698_040 Hb_002148_020--Hb_006698_040 Hb_000025_630 Hb_000025_630 Hb_002148_020--Hb_000025_630 Hb_122548_010 Hb_122548_010 Hb_002148_020--Hb_122548_010 Hb_088163_010 Hb_088163_010 Hb_002148_020--Hb_088163_010 Hb_085972_010 Hb_085972_010 Hb_002148_020--Hb_085972_010 Hb_002320_040 Hb_002320_040 Hb_034552_030--Hb_002320_040 Hb_006588_200 Hb_006588_200 Hb_034552_030--Hb_006588_200 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.32261 0.432956 0.621216 1.18872 0.652797 0.491493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.347822 0.820238 0.24245 1.17083 0

CAGE analysis