Hb_002217_490

Information

Type -
Description -
Location Contig2217: 432901-433362
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_490 0.0 - - -
2 Hb_000080_080 0.1186311112 - - -
3 Hb_005672_030 0.2071429173 - - PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
4 Hb_123926_010 0.2187718917 - - PREDICTED: probable glutathione peroxidase 8-like [Glycine max]
5 Hb_034280_010 0.2245844267 - - Protein bem46, putative [Ricinus communis]
6 Hb_001369_140 0.2301123121 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000676_130 0.2402780439 - - PREDICTED: peroxidase 72-like [Nelumbo nucifera]
8 Hb_032208_050 0.2422369995 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
9 Hb_004242_210 0.2515534241 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
10 Hb_064122_010 0.2547814454 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
11 Hb_173741_010 0.2579228374 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
12 Hb_000041_290 0.2598399083 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_000737_020 0.2628226369 - - -
14 Hb_009780_110 0.2632066993 - - PREDICTED: protein RSI-1 [Cicer arietinum]
15 Hb_002580_020 0.2642488272 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
16 Hb_003050_100 0.2642532944 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
17 Hb_001195_210 0.2646801462 - - -
18 Hb_000552_060 0.2677969034 - - PREDICTED: theobromine synthase 2-like isoform X3 [Jatropha curcas]
19 Hb_002437_010 0.2681193067 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
20 Hb_003972_040 0.2708136003 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_002217_490 Hb_002217_490 Hb_000080_080 Hb_000080_080 Hb_002217_490--Hb_000080_080 Hb_005672_030 Hb_005672_030 Hb_002217_490--Hb_005672_030 Hb_123926_010 Hb_123926_010 Hb_002217_490--Hb_123926_010 Hb_034280_010 Hb_034280_010 Hb_002217_490--Hb_034280_010 Hb_001369_140 Hb_001369_140 Hb_002217_490--Hb_001369_140 Hb_000676_130 Hb_000676_130 Hb_002217_490--Hb_000676_130 Hb_000080_080--Hb_001369_140 Hb_000080_080--Hb_005672_030 Hb_000080_080--Hb_000676_130 Hb_000041_290 Hb_000041_290 Hb_000080_080--Hb_000041_290 Hb_007403_040 Hb_007403_040 Hb_000080_080--Hb_007403_040 Hb_000975_130 Hb_000975_130 Hb_005672_030--Hb_000975_130 Hb_003811_050 Hb_003811_050 Hb_005672_030--Hb_003811_050 Hb_000956_060 Hb_000956_060 Hb_005672_030--Hb_000956_060 Hb_005672_030--Hb_000676_130 Hb_002580_020 Hb_002580_020 Hb_005672_030--Hb_002580_020 Hb_000853_010 Hb_000853_010 Hb_005672_030--Hb_000853_010 Hb_123926_010--Hb_000041_290 Hb_001348_220 Hb_001348_220 Hb_123926_010--Hb_001348_220 Hb_123926_010--Hb_000080_080 Hb_001006_030 Hb_001006_030 Hb_123926_010--Hb_001006_030 Hb_036176_010 Hb_036176_010 Hb_123926_010--Hb_036176_010 Hb_003972_040 Hb_003972_040 Hb_034280_010--Hb_003972_040 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_028115_010 Hb_028115_010 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_064122_010 Hb_064122_010 Hb_001369_140--Hb_064122_010 Hb_000380_210 Hb_000380_210 Hb_001369_140--Hb_000380_210 Hb_032225_030 Hb_032225_030 Hb_001369_140--Hb_032225_030 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_002597_010 Hb_002597_010 Hb_001369_140--Hb_002597_010 Hb_014865_010 Hb_014865_010 Hb_000676_130--Hb_014865_010 Hb_000676_130--Hb_000956_060 Hb_000676_130--Hb_003811_050 Hb_000676_130--Hb_002580_020 Hb_000676_130--Hb_000975_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.124431 0.252462 0.984484 0.0613916 0.138639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.120433 0 0.757258 0

CAGE analysis