Hb_002218_010

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2218: 12260-16473
Sequence    

Annotation

kegg
ID rcu:RCOM_0608080
description ethylene receptor, putative
nr
ID XP_002521957.1
description ethylene receptor, putative [Ricinus communis]
swissprot
ID Q9ZTP3
description Protein EIN4 OS=Arabidopsis thaliana GN=EIN4 PE=1 SV=1
trembl
ID B9S7I8
description Ethylene receptor, putative OS=Ricinus communis GN=RCOM_0608080 PE=4 SV=1
Gene Ontology
ID GO:0005789
description protein ein4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22973: 12027-16043 , PASA_asmbl_22974: 16150-16569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_010 0.0 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
2 Hb_007532_030 0.0613612703 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
3 Hb_000213_100 0.0746065482 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
4 Hb_005348_140 0.0819393377 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
5 Hb_009178_030 0.0856019353 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000343_130 0.0905343375 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
7 Hb_004052_090 0.090685235 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
8 Hb_004907_110 0.0913076532 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
9 Hb_001617_050 0.0921643871 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
10 Hb_007483_100 0.0942903116 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
11 Hb_000307_030 0.0950918524 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
12 Hb_001892_020 0.0954253565 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
13 Hb_016901_010 0.0958148146 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_000230_390 0.096022089 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
15 Hb_000206_240 0.0963425124 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007508_090 0.0963818355 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_000189_560 0.0964069911 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
18 Hb_003371_090 0.0965523035 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_008725_260 0.0974505572 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
20 Hb_000258_270 0.0975118831 - - PREDICTED: cullin-3A [Jatropha curcas]

Gene co-expression network

sample Hb_002218_010 Hb_002218_010 Hb_007532_030 Hb_007532_030 Hb_002218_010--Hb_007532_030 Hb_000213_100 Hb_000213_100 Hb_002218_010--Hb_000213_100 Hb_005348_140 Hb_005348_140 Hb_002218_010--Hb_005348_140 Hb_009178_030 Hb_009178_030 Hb_002218_010--Hb_009178_030 Hb_000343_130 Hb_000343_130 Hb_002218_010--Hb_000343_130 Hb_004052_090 Hb_004052_090 Hb_002218_010--Hb_004052_090 Hb_007532_030--Hb_009178_030 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_022250_090 Hb_022250_090 Hb_000213_100--Hb_022250_090 Hb_003371_090 Hb_003371_090 Hb_000213_100--Hb_003371_090 Hb_000206_240 Hb_000206_240 Hb_000213_100--Hb_000206_240 Hb_000213_100--Hb_007532_030 Hb_000213_100--Hb_007508_090 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_009178_030--Hb_008725_260 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030 Hb_000635_220 Hb_000635_220 Hb_000343_130--Hb_000635_220 Hb_016901_010 Hb_016901_010 Hb_000343_130--Hb_016901_010 Hb_007747_200 Hb_007747_200 Hb_000343_130--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000343_130--Hb_000317_280 Hb_002006_090 Hb_002006_090 Hb_000343_130--Hb_002006_090 Hb_000111_360 Hb_000111_360 Hb_000343_130--Hb_000111_360 Hb_000258_270 Hb_000258_270 Hb_004052_090--Hb_000258_270 Hb_004052_090--Hb_000206_240 Hb_007483_100 Hb_007483_100 Hb_004052_090--Hb_007483_100 Hb_000836_040 Hb_000836_040 Hb_004052_090--Hb_000836_040 Hb_004052_090--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.97 14.9772 3.90752 8.31207 7.19256 12.5436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9736 14.3161 24.0471 10.0939 6.35241

CAGE analysis