Hb_002218_020

Information

Type -
Description -
Location Contig2218: 19377-21516
Sequence    

Annotation

kegg
ID vvi:100261576
description putative DNA-binding protein ESCAROLA
nr
ID XP_012089303.1
description PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
swissprot
ID A1L4X7
description AT-hook motif nuclear-localized protein 14 OS=Arabidopsis thaliana GN=AHL14 PE=1 SV=1
trembl
ID D7TXH6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0081g00620 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22976: 19389-45272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_020 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
2 Hb_102948_010 0.0391636209 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_001430_020 0.0567948215 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
4 Hb_012438_030 0.0631485274 - - PREDICTED: protein sym-1 [Jatropha curcas]
5 Hb_087313_010 0.0664550772 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000663_020 0.0685007749 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_003883_010 0.0747275513 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
8 Hb_005235_070 0.0770266319 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
9 Hb_000318_220 0.07785344 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005162_110 0.0782853975 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
11 Hb_000003_680 0.0820342371 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
12 Hb_000327_330 0.0826910964 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002631_240 0.0837601675 - - JHL17M24.3 [Jatropha curcas]
14 Hb_001623_490 0.0859903806 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
15 Hb_001703_040 0.086114812 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_002107_050 0.0861725572 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
17 Hb_160271_010 0.0865459006 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
18 Hb_012779_080 0.0880594992 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
19 Hb_002876_300 0.0895980075 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
20 Hb_000788_030 0.0896111397 - - PREDICTED: dynamin-2A [Jatropha curcas]

Gene co-expression network

sample Hb_002218_020 Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_102948_010--Hb_001430_020 Hb_102948_010--Hb_087313_010 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_001430_020--Hb_000555_020 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_005731_110 Hb_005731_110 Hb_000663_020--Hb_005731_110 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_002107_050 Hb_002107_050 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_003883_010--Hb_005235_070 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76466 8.53416 20.8446 9.35483 5.68217 5.02052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52483 5.79292 4.26062 4.29788 13.8163

CAGE analysis