Hb_002218_040

Information

Type -
Description -
Location Contig2218: 70138-72960
Sequence    

Annotation

kegg
ID rcu:RCOM_0608020
description hypothetical protein
nr
ID XP_002521951.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7I2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0608020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004881_080 0.0641864261 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
3 Hb_000075_030 0.098507802 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
4 Hb_002248_020 0.1172748219 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
5 Hb_001005_210 0.1213828957 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
6 Hb_032631_080 0.1242319922 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
7 Hb_000061_360 0.130364663 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
8 Hb_000567_300 0.134993758 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_003166_020 0.1386453308 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
10 Hb_000917_330 0.1447202102 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
11 Hb_001936_030 0.1483251979 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
12 Hb_001691_060 0.1521715189 - - lipoxygenase, putative [Ricinus communis]
13 Hb_032621_010 0.1524273559 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
14 Hb_007101_210 0.1558942106 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_026650_010 0.1565391054 - - nitrate transporter, putative [Ricinus communis]
16 Hb_001279_220 0.1567702456 - - protein binding protein, putative [Ricinus communis]
17 Hb_035583_010 0.1589630554 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_003392_030 0.1617811536 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003189_020 0.1634966029 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
20 Hb_001922_010 0.1638435886 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_002218_040 Hb_002218_040 Hb_004881_080 Hb_004881_080 Hb_002218_040--Hb_004881_080 Hb_000075_030 Hb_000075_030 Hb_002218_040--Hb_000075_030 Hb_002248_020 Hb_002248_020 Hb_002218_040--Hb_002248_020 Hb_001005_210 Hb_001005_210 Hb_002218_040--Hb_001005_210 Hb_032631_080 Hb_032631_080 Hb_002218_040--Hb_032631_080 Hb_000061_360 Hb_000061_360 Hb_002218_040--Hb_000061_360 Hb_004881_080--Hb_000061_360 Hb_000567_300 Hb_000567_300 Hb_004881_080--Hb_000567_300 Hb_003189_020 Hb_003189_020 Hb_004881_080--Hb_003189_020 Hb_004881_080--Hb_032631_080 Hb_005550_040 Hb_005550_040 Hb_004881_080--Hb_005550_040 Hb_000075_030--Hb_001005_210 Hb_000075_030--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_000075_030--Hb_001691_060 Hb_000917_330 Hb_000917_330 Hb_000075_030--Hb_000917_330 Hb_001922_010 Hb_001922_010 Hb_000075_030--Hb_001922_010 Hb_029571_010 Hb_029571_010 Hb_002248_020--Hb_029571_010 Hb_004774_060 Hb_004774_060 Hb_002248_020--Hb_004774_060 Hb_001279_220 Hb_001279_220 Hb_002248_020--Hb_001279_220 Hb_001936_030 Hb_001936_030 Hb_002248_020--Hb_001936_030 Hb_004055_180 Hb_004055_180 Hb_002248_020--Hb_004055_180 Hb_001005_210--Hb_032631_080 Hb_001004_130 Hb_001004_130 Hb_001005_210--Hb_001004_130 Hb_000484_040 Hb_000484_040 Hb_001005_210--Hb_000484_040 Hb_000844_090 Hb_000844_090 Hb_001005_210--Hb_000844_090 Hb_001005_210--Hb_001691_060 Hb_032631_080--Hb_001922_010 Hb_032631_080--Hb_001691_060 Hb_109673_010 Hb_109673_010 Hb_032631_080--Hb_109673_010 Hb_000061_360--Hb_000567_300 Hb_000061_360--Hb_005550_040 Hb_000061_360--Hb_003189_020 Hb_001949_010 Hb_001949_010 Hb_000061_360--Hb_001949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.655714 0.371059 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.2323 0.340978

CAGE analysis