Hb_002218_070

Information

Type -
Description -
Location Contig2218: 88711-94808
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04060g
description POPTRDRAFT_571068; hypothetical protein
nr
ID XP_012089296.1
description PREDICTED: myosin-binding protein 1 [Jatropha curcas]
swissprot
ID F4HXQ7
description Myosin-binding protein 1 OS=Arabidopsis thaliana GN=MYOB1 PE=1 SV=1
trembl
ID A0A067JLJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23521 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22980: 88690-91749 , PASA_asmbl_22981: 91751-92588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_070 0.0 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
2 Hb_001410_010 0.1148628458 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
3 Hb_117840_010 0.1185613295 - - Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_000236_110 0.1192194328 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
5 Hb_003106_210 0.1238401068 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
6 Hb_002600_010 0.127170603 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
7 Hb_008175_030 0.1279616835 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
8 Hb_001921_010 0.1347450074 - - ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_057079_020 0.137395984 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027556_040 0.1435083871 - - PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
11 Hb_000589_220 0.1435233658 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_002217_070 0.1435247454 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
13 Hb_000778_020 0.1448535007 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
14 Hb_005880_010 0.1455374732 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
15 Hb_062229_010 0.1458581779 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_004218_160 0.145917734 - - NBS-LRR type disease resistance protein [Medicago truncatula]
17 Hb_010261_030 0.1467607826 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_000141_010 0.1488325693 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
19 Hb_001373_010 0.1494350892 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_000086_370 0.1537165773 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]

Gene co-expression network

sample Hb_002218_070 Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_010261_030 Hb_010261_030 Hb_117840_010--Hb_010261_030 Hb_117840_010--Hb_002600_010 Hb_062479_010 Hb_062479_010 Hb_117840_010--Hb_062479_010 Hb_062229_010 Hb_062229_010 Hb_117840_010--Hb_062229_010 Hb_001879_050 Hb_001879_050 Hb_117840_010--Hb_001879_050 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_000236_110--Hb_002928_180 Hb_000778_020 Hb_000778_020 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_013749_060 Hb_013749_060 Hb_000236_110--Hb_013749_060 Hb_001365_050 Hb_001365_050 Hb_003106_210--Hb_001365_050 Hb_006316_030 Hb_006316_030 Hb_003106_210--Hb_006316_030 Hb_006501_170 Hb_006501_170 Hb_003106_210--Hb_006501_170 Hb_000067_030 Hb_000067_030 Hb_003106_210--Hb_000067_030 Hb_107543_010 Hb_107543_010 Hb_003106_210--Hb_107543_010 Hb_000280_110 Hb_000280_110 Hb_002600_010--Hb_000280_110 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002276_100 Hb_002276_100 Hb_002600_010--Hb_002276_100 Hb_009803_030 Hb_009803_030 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_008175_030--Hb_000778_020 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_001408_150 Hb_001408_150 Hb_008175_030--Hb_001408_150 Hb_008175_030--Hb_057079_020 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.390548 22.8028 3.36441 6.7746 1.19395 1.13933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366789 0.446937 0.696676 14.6466 8.64947

CAGE analysis