Hb_002218_100

Information

Type -
Description -
Location Contig2218: 118308-119749
Sequence    

Annotation

kegg
ID rcu:RCOM_0607550
description hypothetical protein
nr
ID XP_012089477.1
description PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID A0A067JVY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22985: 118228-119108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002218_100 0.0 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
2 Hb_176472_020 0.1250276151 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000563_440 0.1517799765 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
4 Hb_000123_140 0.1597222257 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
5 Hb_000120_350 0.1628628557 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
6 Hb_000959_190 0.1637357145 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
7 Hb_004125_060 0.1665141823 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004449_140 0.1685514284 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
9 Hb_001123_110 0.1690740799 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003430_040 0.1718853136 - - spermidine synthase 1, putative [Ricinus communis]
11 Hb_002217_190 0.1724034828 - - invertase [Hevea brasiliensis]
12 Hb_000732_030 0.173803579 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000032_200 0.1764489568 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_003874_010 0.1767092657 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
15 Hb_000684_100 0.1768036612 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
16 Hb_000347_140 0.1786927369 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_006935_040 0.1800676427 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
18 Hb_000300_710 0.1836419257 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
19 Hb_089140_090 0.1853008583 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
20 Hb_074792_010 0.1863081981 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]

Gene co-expression network

sample Hb_002218_100 Hb_002218_100 Hb_176472_020 Hb_176472_020 Hb_002218_100--Hb_176472_020 Hb_000563_440 Hb_000563_440 Hb_002218_100--Hb_000563_440 Hb_000123_140 Hb_000123_140 Hb_002218_100--Hb_000123_140 Hb_000120_350 Hb_000120_350 Hb_002218_100--Hb_000120_350 Hb_000959_190 Hb_000959_190 Hb_002218_100--Hb_000959_190 Hb_004125_060 Hb_004125_060 Hb_002218_100--Hb_004125_060 Hb_002217_190 Hb_002217_190 Hb_176472_020--Hb_002217_190 Hb_007545_110 Hb_007545_110 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070 Hb_008173_060 Hb_008173_060 Hb_176472_020--Hb_008173_060 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000123_140--Hb_000959_190 Hb_001322_020 Hb_001322_020 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_000120_350--Hb_000959_190 Hb_001123_110 Hb_001123_110 Hb_000120_350--Hb_001123_110 Hb_002151_010 Hb_002151_010 Hb_000120_350--Hb_002151_010 Hb_000120_350--Hb_006935_040 Hb_000300_710 Hb_000300_710 Hb_000120_350--Hb_000300_710 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_000959_190--Hb_001123_110 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_000684_100 Hb_000684_100 Hb_004125_060--Hb_000684_100 Hb_000421_230 Hb_000421_230 Hb_004125_060--Hb_000421_230 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_000009_220 Hb_000009_220 Hb_004125_060--Hb_000009_220 Hb_000979_060 Hb_000979_060 Hb_004125_060--Hb_000979_060 Hb_012545_030 Hb_012545_030 Hb_004125_060--Hb_012545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73872 3.81012 14.1043 3.63145 0.783659 0.584726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.046 2.67841 0.439171 0.452648 1.93316

CAGE analysis