Hb_002221_040

Information

Type -
Description -
Location Contig2221: 34617-37531
Sequence    

Annotation

kegg
ID rcu:RCOM_0580320
description hypothetical protein
nr
ID XP_012079410.1
description PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K756
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12537 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ribose-5-phosphate isomerase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22997: 34826-37552 , PASA_asmbl_22998: 35292-35642
cDNA
(Sanger)
(ID:Location)		 020_K02.ab1: 34854-37552

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002221_040 0.0 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
2 Hb_127552_030 0.0895025907 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_032258_030 0.1067439361 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
4 Hb_105123_010 0.1122014762 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
5 Hb_000398_040 0.1135088101 - - Auxin response factor, putative [Ricinus communis]
6 Hb_103118_010 0.1135193295 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
7 Hb_155159_030 0.1164344067 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
8 Hb_020000_010 0.1180820933 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
9 Hb_011909_100 0.1181671416 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001775_110 0.1188241214 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
11 Hb_000676_150 0.1196087934 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
12 Hb_001292_020 0.1201737026 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
13 Hb_000976_170 0.1215910909 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
14 Hb_009838_080 0.1221317278 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000143_030 0.122324234 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_002183_090 0.122360777 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
17 Hb_012760_190 0.1233076325 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
18 Hb_008648_010 0.123451299 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
19 Hb_004048_110 0.1236292038 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
20 Hb_000046_050 0.124728458 - - PREDICTED: LEC14B homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002221_040 Hb_002221_040 Hb_127552_030 Hb_127552_030 Hb_002221_040--Hb_127552_030 Hb_032258_030 Hb_032258_030 Hb_002221_040--Hb_032258_030 Hb_105123_010 Hb_105123_010 Hb_002221_040--Hb_105123_010 Hb_000398_040 Hb_000398_040 Hb_002221_040--Hb_000398_040 Hb_103118_010 Hb_103118_010 Hb_002221_040--Hb_103118_010 Hb_155159_030 Hb_155159_030 Hb_002221_040--Hb_155159_030 Hb_127552_030--Hb_155159_030 Hb_015934_070 Hb_015934_070 Hb_127552_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_032258_030--Hb_155159_030 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_032258_030--Hb_105123_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_105123_010--Hb_155159_030 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_001775_110 Hb_001775_110 Hb_000398_040--Hb_001775_110 Hb_009113_070 Hb_009113_070 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_001083_020 Hb_001083_020 Hb_000398_040--Hb_001083_020 Hb_114336_020 Hb_114336_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_000061_210 Hb_000061_210 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050 Hb_155159_030--Hb_015934_070 Hb_155159_030--Hb_025240_040 Hb_001579_220 Hb_001579_220 Hb_155159_030--Hb_001579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.34348 1.24357 5.05729 2.73935 7.56827 9.7691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.60113 16.12 12.0385 9.56313 10.4967

CAGE analysis