Hb_002221_060

Information

Type transcription factor
Description TF Family: GRAS
Location Contig2221: 48411-49502
Sequence    

Annotation

kegg
ID rcu:RCOM_0580340
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_002525276.1
description Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
swissprot
ID Q9SZF7
description Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1
trembl
ID B9SH07
description Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_0580340 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein short-root-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23000: 47625-47853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002221_060 0.0 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
2 Hb_000003_380 0.0331339725 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000230_300 0.0446201431 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
4 Hb_004137_040 0.0577538153 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
5 Hb_000483_450 0.0644089891 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
6 Hb_000103_200 0.06813752 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_000928_030 0.0690540219 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_010883_170 0.0751738887 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
9 Hb_001956_130 0.0770362606 - - catalytic, putative [Ricinus communis]
10 Hb_000028_190 0.0771126144 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_004202_020 0.0800108891 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000358_260 0.0830712923 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
13 Hb_003376_020 0.0848490885 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005762_010 0.0877471516 - - PREDICTED: protein CHUP1, chloroplastic-like [Populus euphratica]
15 Hb_001545_020 0.0915482059 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X5 [Populus euphratica]
16 Hb_012653_050 0.0946747387 - - hypothetical protein RCOM_0460020 [Ricinus communis]
17 Hb_152910_050 0.0959552571 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
18 Hb_011618_110 0.0978045378 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
19 Hb_003723_050 0.0988605637 - - conserved hypothetical protein [Ricinus communis]
20 Hb_052530_020 0.1001530435 - - cytochrome B5 isoform 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002221_060 Hb_002221_060 Hb_000003_380 Hb_000003_380 Hb_002221_060--Hb_000003_380 Hb_000230_300 Hb_000230_300 Hb_002221_060--Hb_000230_300 Hb_004137_040 Hb_004137_040 Hb_002221_060--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_002221_060--Hb_000483_450 Hb_000103_200 Hb_000103_200 Hb_002221_060--Hb_000103_200 Hb_000928_030 Hb_000928_030 Hb_002221_060--Hb_000928_030 Hb_000003_380--Hb_000230_300 Hb_000003_380--Hb_004137_040 Hb_000003_380--Hb_000483_450 Hb_003376_020 Hb_003376_020 Hb_000003_380--Hb_003376_020 Hb_000003_380--Hb_000928_030 Hb_000230_300--Hb_004137_040 Hb_005762_010 Hb_005762_010 Hb_000230_300--Hb_005762_010 Hb_000230_300--Hb_000103_200 Hb_000028_190 Hb_000028_190 Hb_000230_300--Hb_000028_190 Hb_004137_040--Hb_000028_190 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_000928_030 Hb_004137_040--Hb_000103_200 Hb_004202_020 Hb_004202_020 Hb_000483_450--Hb_004202_020 Hb_000483_450--Hb_000028_190 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_000103_200--Hb_005762_010 Hb_000103_200--Hb_000928_030 Hb_000103_200--Hb_000028_190 Hb_000928_030--Hb_000028_190 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.817694 11.7934 17.7326 0 0.0174904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0143528 10.5979

CAGE analysis