Hb_002221_070

Information

Type -
Description -
Location Contig2221: 52094-59324
Sequence    

Annotation

kegg
ID rcu:RCOM_0580450
description beta-glucanase, putative
nr
ID XP_002525277.1
description beta-glucanase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SH08
description Beta-glucanase, putative OS=Ricinus communis GN=RCOM_0580450 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glycosyl hydrolase family protein 43 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23004: 52601-59446 , PASA_asmbl_23006: 53487-59459 , PASA_asmbl_23007: 56346-56998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002221_070 0.0 - - beta-glucanase, putative [Ricinus communis]
2 Hb_010883_050 0.0907938503 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
3 Hb_011360_070 0.1064949602 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
4 Hb_007009_010 0.1078040576 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
5 Hb_007904_260 0.1126998467 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
6 Hb_001439_200 0.1128660862 - - Transmembrane protein Tmp21 precursor, putative [Ricinus communis]
7 Hb_161175_010 0.114188288 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
8 Hb_008790_030 0.115035994 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
9 Hb_002016_100 0.1158284225 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
10 Hb_000046_350 0.1172956958 - - conserved hypothetical protein [Ricinus communis]
11 Hb_027625_010 0.1183491347 - - PREDICTED: protein sym-1-like [Jatropha curcas]
12 Hb_027073_050 0.1192528452 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
13 Hb_000336_240 0.1193371277 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_000436_130 0.1193691219 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
15 Hb_003697_040 0.1194370099 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
16 Hb_011512_040 0.1194396841 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
17 Hb_000671_050 0.1195329479 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_000161_060 0.1205655392 - - PREDICTED: probable magnesium transporter NIPA4 [Jatropha curcas]
19 Hb_000817_030 0.1209300003 - - mak, putative [Ricinus communis]
20 Hb_003025_040 0.122464046 - - PREDICTED: elongin-A [Jatropha curcas]

Gene co-expression network

sample Hb_002221_070 Hb_002221_070 Hb_010883_050 Hb_010883_050 Hb_002221_070--Hb_010883_050 Hb_011360_070 Hb_011360_070 Hb_002221_070--Hb_011360_070 Hb_007009_010 Hb_007009_010 Hb_002221_070--Hb_007009_010 Hb_007904_260 Hb_007904_260 Hb_002221_070--Hb_007904_260 Hb_001439_200 Hb_001439_200 Hb_002221_070--Hb_001439_200 Hb_161175_010 Hb_161175_010 Hb_002221_070--Hb_161175_010 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_000421_220 Hb_000421_220 Hb_011360_070--Hb_000421_220 Hb_002183_060 Hb_002183_060 Hb_011360_070--Hb_002183_060 Hb_003605_090 Hb_003605_090 Hb_011360_070--Hb_003605_090 Hb_011360_070--Hb_003697_040 Hb_008453_030 Hb_008453_030 Hb_011360_070--Hb_008453_030 Hb_004127_020 Hb_004127_020 Hb_011360_070--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_007009_010--Hb_009615_070 Hb_007009_010--Hb_000336_240 Hb_007009_010--Hb_003605_090 Hb_003502_090 Hb_003502_090 Hb_007009_010--Hb_003502_090 Hb_003414_050 Hb_003414_050 Hb_007009_010--Hb_003414_050 Hb_007009_010--Hb_010883_050 Hb_000046_320 Hb_000046_320 Hb_007904_260--Hb_000046_320 Hb_003053_020 Hb_003053_020 Hb_007904_260--Hb_003053_020 Hb_001512_030 Hb_001512_030 Hb_007904_260--Hb_001512_030 Hb_006117_070 Hb_006117_070 Hb_007904_260--Hb_006117_070 Hb_007904_260--Hb_003697_040 Hb_000638_250 Hb_000638_250 Hb_007904_260--Hb_000638_250 Hb_019516_080 Hb_019516_080 Hb_001439_200--Hb_019516_080 Hb_000161_060 Hb_000161_060 Hb_001439_200--Hb_000161_060 Hb_006846_060 Hb_006846_060 Hb_001439_200--Hb_006846_060 Hb_001439_200--Hb_000046_320 Hb_001439_200--Hb_007904_260 Hb_000125_210 Hb_000125_210 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_019113_020 Hb_019113_020 Hb_161175_010--Hb_019113_020 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8898 3.46621 3.91837 15.3288 6.59858 8.2436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4113 21.101 19.8502 7.51952 14.9654

CAGE analysis