Hb_002221_080

Information

Type -
Description -
Location Contig2221: 70013-73005
Sequence    

Annotation

kegg
ID cit:102624167
description hypothetical protein
nr
ID XP_012079587.1
description PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067GU89
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040224mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23011: 70025-72774 , PASA_asmbl_23012: 71500-72510 , PASA_asmbl_23013: 71500-73079 , PASA_asmbl_23014: 71500-73079 , PASA_asmbl_23015: 70340-71036 , PASA_asmbl_23016: 70530-71145
cDNA
(Sanger)
(ID:Location)		 047_J08.ab1: 71740-72771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002221_080 0.0 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
2 Hb_000284_010 0.0929077326 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_002298_040 0.094767668 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
4 Hb_005016_130 0.096329518 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
5 Hb_000078_030 0.096435937 - - conserved hypothetical protein [Ricinus communis]
6 Hb_115919_020 0.1005082512 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
7 Hb_000787_070 0.1062392625 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
8 Hb_010578_090 0.1115920102 - - HEV2.1 [Hevea brasiliensis]
9 Hb_012779_110 0.1129585659 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
10 Hb_000193_230 0.1154040277 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
11 Hb_000143_050 0.1158694855 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
12 Hb_001102_010 0.1170307368 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
13 Hb_000580_170 0.1196693567 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
14 Hb_001109_120 0.1197866682 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
15 Hb_001722_040 0.1212257652 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_029879_080 0.1223182491 - - unknown [Populus trichocarpa]
17 Hb_003023_050 0.125487068 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
18 Hb_007451_030 0.125986223 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
19 Hb_030765_020 0.1289156555 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_012799_060 0.1312107278 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002221_080 Hb_002221_080 Hb_000284_010 Hb_000284_010 Hb_002221_080--Hb_000284_010 Hb_002298_040 Hb_002298_040 Hb_002221_080--Hb_002298_040 Hb_005016_130 Hb_005016_130 Hb_002221_080--Hb_005016_130 Hb_000078_030 Hb_000078_030 Hb_002221_080--Hb_000078_030 Hb_115919_020 Hb_115919_020 Hb_002221_080--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_002221_080--Hb_000787_070 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_000078_030 Hb_000284_010--Hb_005016_130 Hb_000284_010--Hb_002298_040 Hb_000193_230 Hb_000193_230 Hb_000284_010--Hb_000193_230 Hb_002298_040--Hb_000193_230 Hb_002298_040--Hb_000078_030 Hb_002298_040--Hb_005016_130 Hb_010578_090 Hb_010578_090 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000787_070 Hb_005016_130--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_005016_130--Hb_010578_090 Hb_000078_030--Hb_000193_230 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_000193_230 Hb_115919_020--Hb_002298_040 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_000787_070--Hb_001102_010 Hb_024505_040 Hb_024505_040 Hb_000787_070--Hb_024505_040 Hb_000787_070--Hb_000078_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.511 2.21228 2.2576 4.11367 144.774 105.339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
255.378 204.586 98.6761 12.8287 2.28443

CAGE analysis