Hb_002224_050

Information

Type -
Description -
Location Contig2224: 28801-29356
Sequence    

Annotation

kegg
ID dosa:Os04t0464100-01
description Os04g0464100; Heavy metal transport/detoxification protein domain containing protein.
nr
ID XP_010486324.1
description PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
swissprot
ID -
description -
trembl
ID A0A067JJI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002224_050 0.0 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
2 Hb_041476_010 0.0414851258 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
3 Hb_007659_010 0.0752659122 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
4 Hb_000541_010 0.1131582827 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_003245_010 0.1169700328 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_165958_010 0.1172996876 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_117252_010 0.1515682253 - - hypothetical protein [Pseudomonas tolaasii]
8 Hb_042795_010 0.1619138216 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_053575_010 0.1710431087 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_003401_040 0.175154005 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
11 Hb_011114_050 0.1791877056 - - -
12 Hb_013874_010 0.181783941 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
13 Hb_017279_030 0.1850435108 - - -
14 Hb_028105_020 0.1960664047 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
15 Hb_162933_010 0.1972323993 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
16 Hb_003463_040 0.1996265498 - - -
17 Hb_007044_280 0.2023182144 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
18 Hb_003694_070 0.2040152395 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
19 Hb_007111_020 0.2080868535 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
20 Hb_024128_010 0.2108385614 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]

Gene co-expression network

sample Hb_002224_050 Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_002224_050--Hb_041476_010 Hb_007659_010 Hb_007659_010 Hb_002224_050--Hb_007659_010 Hb_000541_010 Hb_000541_010 Hb_002224_050--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_002224_050--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_002224_050--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_002224_050--Hb_117252_010 Hb_041476_010--Hb_000541_010 Hb_041476_010--Hb_003245_010 Hb_041476_010--Hb_165958_010 Hb_041476_010--Hb_117252_010 Hb_041476_010--Hb_007659_010 Hb_007044_280 Hb_007044_280 Hb_007659_010--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_007659_010--Hb_018591_040 Hb_007659_010--Hb_000541_010 Hb_007659_010--Hb_003245_010 Hb_000541_010--Hb_003245_010 Hb_000541_010--Hb_165958_010 Hb_000541_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_000541_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_000541_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_000541_010--Hb_003401_040 Hb_003245_010--Hb_165958_010 Hb_003245_010--Hb_117252_010 Hb_003245_010--Hb_042795_010 Hb_003245_010--Hb_053575_010 Hb_003245_010--Hb_003401_040 Hb_165958_010--Hb_117252_010 Hb_165958_010--Hb_042795_010 Hb_165958_010--Hb_053575_010 Hb_165958_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.191466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.236709

CAGE analysis