Hb_002226_030

Information

Type -
Description -
Location Contig2226: 34817-35563
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35030g
description POPTRDRAFT_815499; hypothetical protein
nr
ID XP_012081273.1
description PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
swissprot
ID Q9LYK2
description High affinity nitrate transporter 2.7 OS=Arabidopsis thaliana GN=NRT2.7 PE=2 SV=1
trembl
ID A0A067LLR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09568 PE=4 SV=1
Gene Ontology
ID GO:0009705
description high affinity nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_030 0.0 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
2 Hb_000997_270 0.0849745385 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
3 Hb_101832_010 0.1134049472 - - nitrate transporter, putative [Ricinus communis]
4 Hb_000127_010 0.1276923807 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
5 Hb_002111_050 0.1281040348 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
6 Hb_000041_080 0.1326473184 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_003376_100 0.1393951761 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
8 Hb_001053_180 0.1410984267 - - protein binding protein, putative [Ricinus communis]
9 Hb_017098_030 0.1466999966 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
10 Hb_002659_140 0.1470617339 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
11 Hb_005829_010 0.1486434613 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
12 Hb_001776_110 0.1488561839 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
13 Hb_004970_200 0.1497110144 - - serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_000096_090 0.1518818929 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
15 Hb_001437_300 0.1530986804 - - -
16 Hb_000345_390 0.1533088336 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
17 Hb_002284_090 0.1537584865 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
18 Hb_002942_020 0.1544459074 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_076787_010 0.1550813208 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
20 Hb_000699_110 0.1553215687 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]

Gene co-expression network

sample Hb_002226_030 Hb_002226_030 Hb_000997_270 Hb_000997_270 Hb_002226_030--Hb_000997_270 Hb_101832_010 Hb_101832_010 Hb_002226_030--Hb_101832_010 Hb_000127_010 Hb_000127_010 Hb_002226_030--Hb_000127_010 Hb_002111_050 Hb_002111_050 Hb_002226_030--Hb_002111_050 Hb_000041_080 Hb_000041_080 Hb_002226_030--Hb_000041_080 Hb_003376_100 Hb_003376_100 Hb_002226_030--Hb_003376_100 Hb_005829_010 Hb_005829_010 Hb_000997_270--Hb_005829_010 Hb_000997_270--Hb_003376_100 Hb_001616_080 Hb_001616_080 Hb_000997_270--Hb_001616_080 Hb_002284_090 Hb_002284_090 Hb_000997_270--Hb_002284_090 Hb_000997_270--Hb_000127_010 Hb_000345_390 Hb_000345_390 Hb_101832_010--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_101832_010--Hb_116349_100 Hb_001053_180 Hb_001053_180 Hb_101832_010--Hb_001053_180 Hb_000630_070 Hb_000630_070 Hb_101832_010--Hb_000630_070 Hb_002054_010 Hb_002054_010 Hb_101832_010--Hb_002054_010 Hb_024682_010 Hb_024682_010 Hb_000127_010--Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000454_050 Hb_000454_050 Hb_000127_010--Hb_000454_050 Hb_000127_010--Hb_001053_180 Hb_002659_140 Hb_002659_140 Hb_002111_050--Hb_002659_140 Hb_006816_290 Hb_006816_290 Hb_002111_050--Hb_006816_290 Hb_001437_300 Hb_001437_300 Hb_002111_050--Hb_001437_300 Hb_011224_080 Hb_011224_080 Hb_002111_050--Hb_011224_080 Hb_000352_110 Hb_000352_110 Hb_002111_050--Hb_000352_110 Hb_000412_110 Hb_000412_110 Hb_000041_080--Hb_000412_110 Hb_000023_230 Hb_000023_230 Hb_000041_080--Hb_000023_230 Hb_002529_100 Hb_002529_100 Hb_000041_080--Hb_002529_100 Hb_003540_040 Hb_003540_040 Hb_000041_080--Hb_003540_040 Hb_002681_020 Hb_002681_020 Hb_000041_080--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_000041_080--Hb_000676_220 Hb_003376_100--Hb_005829_010 Hb_000265_150 Hb_000265_150 Hb_003376_100--Hb_000265_150 Hb_000085_060 Hb_000085_060 Hb_003376_100--Hb_000085_060 Hb_002716_150 Hb_002716_150 Hb_003376_100--Hb_002716_150 Hb_000205_120 Hb_000205_120 Hb_003376_100--Hb_000205_120 Hb_076787_010 Hb_076787_010 Hb_003376_100--Hb_076787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.194 4.61045 24.8001 14.443 86.3256 57.534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
122.306 64.0483 42.4397 10.5753 36.1713

CAGE analysis