Hb_002226_060

Information

Type -
Description -
Location Contig2226: 52216-56251
Sequence    

Annotation

kegg
ID rcu:RCOM_1095630
description sirohydrochlorin ferrochelatase, putative (EC:4.99.1.3)
nr
ID XP_012081294.1
description PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
swissprot
ID P61817
description Sirohydrochlorin ferrochelatase OS=Bacillus megaterium GN=sirB PE=3 SV=1
trembl
ID A0A067LAA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09571 PE=4 SV=1
Gene Ontology
ID GO:0009507
description sirohydrochlorin ferrochelatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23054: 54791-56200 , PASA_asmbl_23055: 52874-56167
cDNA
(Sanger)
(ID:Location)		 049_N22r.ab1: 51844-52918 , 051_F20.ab1: 55294-56200

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_060 0.0 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
2 Hb_011512_070 0.0603763096 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
3 Hb_000656_240 0.0717179061 - - proteasome subunit alpha type, putative [Ricinus communis]
4 Hb_001341_150 0.0719374488 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_003018_010 0.0720499296 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
6 Hb_000529_030 0.0739546023 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_001279_080 0.0749602924 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
8 Hb_000205_090 0.0753299971 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
9 Hb_000402_160 0.0753701022 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
10 Hb_000329_200 0.0755561242 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
11 Hb_001195_480 0.0765865243 - - cop9 complex subunit, putative [Ricinus communis]
12 Hb_010098_050 0.0766446777 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
13 Hb_000457_180 0.0779600756 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
14 Hb_008554_060 0.0832340107 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
15 Hb_002534_150 0.0833571687 - - catalytic, putative [Ricinus communis]
16 Hb_003064_020 0.0838491116 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
17 Hb_000580_090 0.0847962127 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_002056_050 0.087211069 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
19 Hb_000527_060 0.0875900621 - - Protein C20orf11, putative [Ricinus communis]
20 Hb_118419_010 0.0891473303 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002226_060 Hb_002226_060 Hb_011512_070 Hb_011512_070 Hb_002226_060--Hb_011512_070 Hb_000656_240 Hb_000656_240 Hb_002226_060--Hb_000656_240 Hb_001341_150 Hb_001341_150 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_000529_030 Hb_000529_030 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_011512_070--Hb_000656_240 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_003226_100 Hb_003226_100 Hb_003018_010--Hb_003226_100 Hb_000025_620 Hb_000025_620 Hb_003018_010--Hb_000025_620 Hb_000836_470 Hb_000836_470 Hb_003018_010--Hb_000836_470 Hb_003018_010--Hb_000656_240 Hb_000996_140 Hb_000996_140 Hb_003018_010--Hb_000996_140 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_000529_030--Hb_001195_480 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_000529_030--Hb_000656_240 Hb_008071_020 Hb_008071_020 Hb_001279_080--Hb_008071_020 Hb_001279_080--Hb_001931_010 Hb_018133_020 Hb_018133_020 Hb_001279_080--Hb_018133_020 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51052 3.81956 10.2403 5.64167 7.60121 4.63952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0916 16.2426 7.73462 6.4468 6.25237

CAGE analysis