Hb_002228_090

Information

Type -
Description -
Location Contig2228: 79724-80713
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23560g
description POPTRDRAFT_763157; hypothetical protein
nr
ID XP_002308513.1
description hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9HCQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23560g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_090 0.0 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
2 Hb_081207_010 0.1193670192 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
3 Hb_175450_010 0.1534125535 - - -
4 Hb_000184_190 0.1766961264 - - hypothetical protein VITISV_016970 [Vitis vinifera]
5 Hb_000445_220 0.1885916688 - - -
6 Hb_006922_040 0.1917535818 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
7 Hb_002259_050 0.1921463819 - - unnamed protein product [Vitis vinifera]
8 Hb_002431_060 0.199502928 - - -
9 Hb_002615_100 0.2346193597 - - -
10 Hb_006588_010 0.2468761057 - - -
11 Hb_123763_010 0.2568179909 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
12 Hb_000373_300 0.2589799425 - - hypothetical protein F775_20382 [Aegilops tauschii]
13 Hb_002788_040 0.2724907786 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002741_030 0.2736714231 - - -
15 Hb_002918_300 0.2738162791 - - -
16 Hb_000501_020 0.277221745 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
17 Hb_000398_030 0.2814379086 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003837_020 0.2863842798 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
19 Hb_001427_140 0.2868303397 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
20 Hb_031284_050 0.2880817619 - - -

Gene co-expression network

sample Hb_002228_090 Hb_002228_090 Hb_081207_010 Hb_081207_010 Hb_002228_090--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002228_090--Hb_175450_010 Hb_000184_190 Hb_000184_190 Hb_002228_090--Hb_000184_190 Hb_000445_220 Hb_000445_220 Hb_002228_090--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002228_090--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002228_090--Hb_002259_050 Hb_081207_010--Hb_000445_220 Hb_081207_010--Hb_002259_050 Hb_081207_010--Hb_006922_040 Hb_081207_010--Hb_175450_010 Hb_002431_060 Hb_002431_060 Hb_081207_010--Hb_002431_060 Hb_175450_010--Hb_002259_050 Hb_002615_100 Hb_002615_100 Hb_175450_010--Hb_002615_100 Hb_175450_010--Hb_002431_060 Hb_175450_010--Hb_000445_220 Hb_003837_020 Hb_003837_020 Hb_000184_190--Hb_003837_020 Hb_031284_050 Hb_031284_050 Hb_000184_190--Hb_031284_050 Hb_002392_050 Hb_002392_050 Hb_000184_190--Hb_002392_050 Hb_000869_110 Hb_000869_110 Hb_000184_190--Hb_000869_110 Hb_039112_010 Hb_039112_010 Hb_000184_190--Hb_039112_010 Hb_000445_220--Hb_006922_040 Hb_000501_020 Hb_000501_020 Hb_000445_220--Hb_000501_020 Hb_000445_220--Hb_002259_050 Hb_000445_220--Hb_002431_060 Hb_006922_040--Hb_000501_020 Hb_006922_040--Hb_002259_050 Hb_006922_040--Hb_000184_190 Hb_002259_050--Hb_002431_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112006 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205261 0.403589 0 0 0

CAGE analysis