Hb_002228_120

Information

Type -
Description -
Location Contig2228: 97838-102282
Sequence    

Annotation

kegg
ID rcu:RCOM_1021600
description potassium channel beta, putative (EC:1.1.1.91)
nr
ID XP_002518142.1
description potassium channel beta, putative [Ricinus communis]
swissprot
ID O23016
description Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana GN=KAB1 PE=1 SV=1
trembl
ID B9RWM3
description Potassium channel beta, putative OS=Ricinus communis GN=RCOM_1021600 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable voltage-gated potassium channel subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23076: 97855-102246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_120 0.0 - - potassium channel beta, putative [Ricinus communis]
2 Hb_000413_120 0.0817391336 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
3 Hb_004933_010 0.0948947206 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
4 Hb_009662_040 0.1019691798 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
5 Hb_009367_070 0.1035518164 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
6 Hb_034713_010 0.1101008364 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
7 Hb_140627_040 0.113664836 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_004112_080 0.1196638939 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
9 Hb_001635_140 0.1236545842 - - protein with unknown function [Ricinus communis]
10 Hb_000333_140 0.1249469924 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
11 Hb_015292_020 0.1260052165 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_002999_020 0.1294739051 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
13 Hb_004705_060 0.1300642479 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
14 Hb_011628_010 0.1310826741 - - tonoplast intrinsic protein, putative [Ricinus communis]
15 Hb_000666_040 0.1320356168 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
16 Hb_002809_040 0.1326051266 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001623_560 0.1347146821 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
18 Hb_153258_030 0.1354202062 - - hypothetical protein RCOM_0853150 [Ricinus communis]
19 Hb_001136_080 0.1368461062 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
20 Hb_005116_090 0.1369095322 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002228_120 Hb_002228_120 Hb_000413_120 Hb_000413_120 Hb_002228_120--Hb_000413_120 Hb_004933_010 Hb_004933_010 Hb_002228_120--Hb_004933_010 Hb_009662_040 Hb_009662_040 Hb_002228_120--Hb_009662_040 Hb_009367_070 Hb_009367_070 Hb_002228_120--Hb_009367_070 Hb_034713_010 Hb_034713_010 Hb_002228_120--Hb_034713_010 Hb_140627_040 Hb_140627_040 Hb_002228_120--Hb_140627_040 Hb_000413_120--Hb_004933_010 Hb_015292_020 Hb_015292_020 Hb_000413_120--Hb_015292_020 Hb_000413_120--Hb_140627_040 Hb_000333_140 Hb_000333_140 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_001635_140 Hb_001635_140 Hb_004933_010--Hb_001635_140 Hb_011628_010 Hb_011628_010 Hb_004933_010--Hb_011628_010 Hb_004933_010--Hb_000333_140 Hb_004933_010--Hb_015292_020 Hb_000666_040 Hb_000666_040 Hb_009662_040--Hb_000666_040 Hb_002999_020 Hb_002999_020 Hb_009662_040--Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_009662_040--Hb_153258_030 Hb_016734_110 Hb_016734_110 Hb_009662_040--Hb_016734_110 Hb_001623_560 Hb_001623_560 Hb_009662_040--Hb_001623_560 Hb_000742_040 Hb_000742_040 Hb_009662_040--Hb_000742_040 Hb_009367_070--Hb_034713_010 Hb_004705_060 Hb_004705_060 Hb_009367_070--Hb_004705_060 Hb_004112_080 Hb_004112_080 Hb_009367_070--Hb_004112_080 Hb_009367_070--Hb_140627_040 Hb_009367_070--Hb_011628_010 Hb_000207_060 Hb_000207_060 Hb_009367_070--Hb_000207_060 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_034713_010--Hb_004112_080 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_140627_040--Hb_000207_060 Hb_140627_040--Hb_009062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12707 0.334999 5.73584 17.4383 0.0159199 0.130227
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0362349 0.114019 0.159811 0.444592 1.30434

CAGE analysis