Hb_002228_130

Information

Type -
Description -
Location Contig2228: 118161-119863
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001628_060 0.0842565939 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
3 Hb_152640_010 0.1240028322 - - PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
4 Hb_015175_060 0.1885355871 - - copper transport protein atox1, putative [Ricinus communis]
5 Hb_000330_010 0.1968907114 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
6 Hb_086639_110 0.1968909185 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
7 Hb_000107_690 0.1969422098 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000130_430 0.1969457706 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
9 Hb_003251_020 0.1969475566 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
10 Hb_001136_150 0.1969638258 - - conserved hypothetical protein [Ricinus communis]
11 Hb_158909_010 0.196965822 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_037000_010 0.1970686572 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
13 Hb_001248_160 0.1970927034 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
14 Hb_004957_040 0.197153599 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
15 Hb_163180_010 0.1973041287 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_000134_140 0.1973490166 - - lipid binding protein, putative [Ricinus communis]
17 Hb_001926_060 0.1973770566 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
18 Hb_007058_020 0.1974466875 - - -
19 Hb_131748_010 0.1980644063 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
20 Hb_176760_010 0.1981034259 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]

Gene co-expression network

sample Hb_002228_130 Hb_002228_130 Hb_001628_060 Hb_001628_060 Hb_002228_130--Hb_001628_060 Hb_152640_010 Hb_152640_010 Hb_002228_130--Hb_152640_010 Hb_015175_060 Hb_015175_060 Hb_002228_130--Hb_015175_060 Hb_000330_010 Hb_000330_010 Hb_002228_130--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_002228_130--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_002228_130--Hb_000107_690 Hb_001488_120 Hb_001488_120 Hb_001628_060--Hb_001488_120 Hb_000032_110 Hb_000032_110 Hb_001628_060--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_001628_060--Hb_002918_100 Hb_023930_010 Hb_023930_010 Hb_001628_060--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_001628_060--Hb_184500_020 Hb_152640_010--Hb_001628_060 Hb_152640_010--Hb_015175_060 Hb_001157_070 Hb_001157_070 Hb_152640_010--Hb_001157_070 Hb_000009_490 Hb_000009_490 Hb_152640_010--Hb_000009_490 Hb_089785_010 Hb_089785_010 Hb_152640_010--Hb_089785_010 Hb_016734_050 Hb_016734_050 Hb_015175_060--Hb_016734_050 Hb_056718_010 Hb_056718_010 Hb_015175_060--Hb_056718_010 Hb_013654_030 Hb_013654_030 Hb_015175_060--Hb_013654_030 Hb_012799_080 Hb_012799_080 Hb_015175_060--Hb_012799_080 Hb_001246_080 Hb_001246_080 Hb_015175_060--Hb_001246_080 Hb_010812_080 Hb_010812_080 Hb_015175_060--Hb_010812_080 Hb_000330_010--Hb_086639_110 Hb_000330_010--Hb_000107_690 Hb_003251_020 Hb_003251_020 Hb_000330_010--Hb_003251_020 Hb_000130_430 Hb_000130_430 Hb_000330_010--Hb_000130_430 Hb_158909_010 Hb_158909_010 Hb_000330_010--Hb_158909_010 Hb_001136_150 Hb_001136_150 Hb_000330_010--Hb_001136_150 Hb_086639_110--Hb_000107_690 Hb_086639_110--Hb_003251_020 Hb_086639_110--Hb_000130_430 Hb_086639_110--Hb_158909_010 Hb_086639_110--Hb_001136_150 Hb_000107_690--Hb_003251_020 Hb_000107_690--Hb_158909_010 Hb_037000_010 Hb_037000_010 Hb_000107_690--Hb_037000_010 Hb_004957_040 Hb_004957_040 Hb_000107_690--Hb_004957_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0303249 0.122899 0.0124953 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis