Hb_002232_030

Information

Type -
Description -
Location Contig2232: 11681-15054
Sequence    

Annotation

kegg
ID rcu:RCOM_1382150
description Pinin, putative
nr
ID XP_002522077.1
description Pinin, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7W1
description Pinin, putative OS=Ricinus communis GN=RCOM_1382150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23102: 11859-12975 , PASA_asmbl_23103: 12995-15545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_030 0.0 - - Pinin, putative [Ricinus communis]
2 Hb_000514_060 0.0759768736 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
3 Hb_000009_600 0.0925113037 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
4 Hb_004228_010 0.0930022077 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
5 Hb_000796_040 0.095466722 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000853_210 0.09619167 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
7 Hb_064903_010 0.0971261717 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_009411_010 0.0977341909 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
9 Hb_015884_030 0.0992677317 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
10 Hb_002081_010 0.0996538349 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003938_080 0.1000768071 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
12 Hb_014267_010 0.1011786689 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
13 Hb_003847_120 0.1024139103 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_183963_030 0.1031807364 - - DNA binding protein, putative [Ricinus communis]
15 Hb_000077_230 0.10337798 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
16 Hb_001472_090 0.1047430599 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
17 Hb_002233_100 0.1047522951 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
18 Hb_000574_440 0.1048684359 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
19 Hb_006649_060 0.1054505578 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009620_050 0.1059523418 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_002232_030 Hb_002232_030 Hb_000514_060 Hb_000514_060 Hb_002232_030--Hb_000514_060 Hb_000009_600 Hb_000009_600 Hb_002232_030--Hb_000009_600 Hb_004228_010 Hb_004228_010 Hb_002232_030--Hb_004228_010 Hb_000796_040 Hb_000796_040 Hb_002232_030--Hb_000796_040 Hb_000853_210 Hb_000853_210 Hb_002232_030--Hb_000853_210 Hb_064903_010 Hb_064903_010 Hb_002232_030--Hb_064903_010 Hb_009411_010 Hb_009411_010 Hb_000514_060--Hb_009411_010 Hb_007757_110 Hb_007757_110 Hb_000514_060--Hb_007757_110 Hb_001797_050 Hb_001797_050 Hb_000514_060--Hb_001797_050 Hb_000796_030 Hb_000796_030 Hb_000514_060--Hb_000796_030 Hb_001930_010 Hb_001930_010 Hb_000514_060--Hb_001930_010 Hb_009851_070 Hb_009851_070 Hb_000009_600--Hb_009851_070 Hb_000009_600--Hb_000796_040 Hb_002234_170 Hb_002234_170 Hb_000009_600--Hb_002234_170 Hb_000009_600--Hb_000853_210 Hb_009503_030 Hb_009503_030 Hb_000009_600--Hb_009503_030 Hb_002235_300 Hb_002235_300 Hb_000009_600--Hb_002235_300 Hb_004306_080 Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_004228_010--Hb_000796_040 Hb_014267_010 Hb_014267_010 Hb_004228_010--Hb_014267_010 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_010417_050 Hb_010417_050 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_000796_040--Hb_000853_210 Hb_007416_160 Hb_007416_160 Hb_000796_040--Hb_007416_160 Hb_000796_040--Hb_009503_030 Hb_000116_500 Hb_000116_500 Hb_000796_040--Hb_000116_500 Hb_034432_030 Hb_034432_030 Hb_000853_210--Hb_034432_030 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_000853_210--Hb_004306_080 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4373 30.1584 11.9903 15.9557 37.1617 37.8599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1253 10.0857 33.4175 10.1366 24.1277

CAGE analysis