Hb_002232_060

Information

Type -
Description -
Location Contig2232: 22992-24507
Sequence    

Annotation

kegg
ID cic:CICLE_v10029295mg
description hypothetical protein
nr
ID XP_012072765.1
description PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0J0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06957 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23104: 17635-24565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_060 0.0 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
2 Hb_001979_020 0.0690294911 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
3 Hb_005843_140 0.0885803638 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
4 Hb_000072_200 0.0898928647 - - PREDICTED: myb-like protein X [Jatropha curcas]
5 Hb_003020_150 0.0905734669 - - tropinone reductase, putative [Ricinus communis]
6 Hb_000465_070 0.091773072 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
7 Hb_006198_070 0.0921335509 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
8 Hb_000457_290 0.0991539586 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
9 Hb_000424_200 0.101281377 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
10 Hb_002631_180 0.1030629323 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
11 Hb_000327_060 0.1063283323 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
12 Hb_011485_020 0.1085411345 - - protein with unknown function [Ricinus communis]
13 Hb_002239_050 0.1093118624 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
14 Hb_007037_020 0.1094198635 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
15 Hb_013405_140 0.1101188345 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
16 Hb_003880_030 0.1103920619 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
17 Hb_006355_040 0.1105201161 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
18 Hb_002016_080 0.1117301623 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
19 Hb_000169_040 0.1121274975 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
20 Hb_005162_060 0.1130139278 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002232_060 Hb_002232_060 Hb_001979_020 Hb_001979_020 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_000072_200 Hb_000072_200 Hb_002232_060--Hb_000072_200 Hb_003020_150 Hb_003020_150 Hb_002232_060--Hb_003020_150 Hb_000465_070 Hb_000465_070 Hb_002232_060--Hb_000465_070 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070 Hb_001979_020--Hb_003020_150 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_001979_020--Hb_000072_200 Hb_000384_120 Hb_000384_120 Hb_001979_020--Hb_000384_120 Hb_005843_140--Hb_006198_070 Hb_044653_040 Hb_044653_040 Hb_005843_140--Hb_044653_040 Hb_003669_020 Hb_003669_020 Hb_005843_140--Hb_003669_020 Hb_002968_040 Hb_002968_040 Hb_005843_140--Hb_002968_040 Hb_006355_040 Hb_006355_040 Hb_005843_140--Hb_006355_040 Hb_000505_130 Hb_000505_130 Hb_005843_140--Hb_000505_130 Hb_000072_200--Hb_000465_070 Hb_000107_150 Hb_000107_150 Hb_000072_200--Hb_000107_150 Hb_000035_480 Hb_000035_480 Hb_000072_200--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000072_200--Hb_000457_290 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_000465_070--Hb_000035_480 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_026527_050 Hb_026527_050 Hb_006198_070--Hb_026527_050 Hb_006198_070--Hb_003669_020 Hb_003540_240 Hb_003540_240 Hb_006198_070--Hb_003540_240 Hb_006198_070--Hb_006355_040 Hb_004057_010 Hb_004057_010 Hb_006198_070--Hb_004057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67946 3.0405 3.96979 4.36722 1.86892 2.10332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04676 15.2977 6.64794 5.48306 7.05274

CAGE analysis