Hb_002232_100

Information

Type -
Description -
Location Contig2232: 45346-50725
Sequence    

Annotation

kegg
ID rcu:RCOM_1381970
description vacuolar ATP synthase subunit f, putative (EC:3.6.3.14)
nr
ID ACL01095.1
description vacuolar ATPase F subunit [Hevea brasiliensis]
swissprot
ID Q9ZQX4
description V-type proton ATPase subunit F OS=Arabidopsis thaliana GN=VHA-F PE=2 SV=1
trembl
ID B8Y6I1
description V-type proton ATPase subunit F OS=Hevea brasiliensis GN=VHA-F PE=2 SV=1
Gene Ontology
ID GO:0005794
description v-type proton atpase subunit f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23109: 45318-50716 , PASA_asmbl_23110: 45591-45950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_100 0.0 - - vacuolar ATPase F subunit [Hevea brasiliensis]
2 Hb_010457_030 0.0812463915 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
3 Hb_007904_200 0.0814092165 - - protein binding protein, putative [Ricinus communis]
4 Hb_011671_240 0.0817081105 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
5 Hb_000451_010 0.0825953657 - - secretory carrier membrane protein, putative [Ricinus communis]
6 Hb_000010_330 0.0926963599 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
7 Hb_002506_020 0.0948052991 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
8 Hb_019280_040 0.0948969923 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003665_060 0.0949987639 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
10 Hb_082821_010 0.0957468313 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
11 Hb_003964_070 0.0958987788 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
12 Hb_000656_040 0.0963935134 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
13 Hb_003175_010 0.0966748469 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
14 Hb_001633_130 0.0970557721 - - PREDICTED: uncharacterized protein LOC105630200 [Jatropha curcas]
15 Hb_158062_010 0.0971733148 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
16 Hb_003417_020 0.0972484038 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
17 Hb_009557_070 0.0986971985 - - conserved hypothetical protein [Ricinus communis]
18 Hb_168000_010 0.0989292853 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
19 Hb_000618_040 0.1000213179 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
20 Hb_007441_190 0.1009276373 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]

Gene co-expression network

sample Hb_002232_100 Hb_002232_100 Hb_010457_030 Hb_010457_030 Hb_002232_100--Hb_010457_030 Hb_007904_200 Hb_007904_200 Hb_002232_100--Hb_007904_200 Hb_011671_240 Hb_011671_240 Hb_002232_100--Hb_011671_240 Hb_000451_010 Hb_000451_010 Hb_002232_100--Hb_000451_010 Hb_000010_330 Hb_000010_330 Hb_002232_100--Hb_000010_330 Hb_002506_020 Hb_002506_020 Hb_002232_100--Hb_002506_020 Hb_010457_030--Hb_000010_330 Hb_048937_040 Hb_048937_040 Hb_010457_030--Hb_048937_040 Hb_019280_040 Hb_019280_040 Hb_010457_030--Hb_019280_040 Hb_010457_030--Hb_007904_200 Hb_000365_390 Hb_000365_390 Hb_010457_030--Hb_000365_390 Hb_003175_010 Hb_003175_010 Hb_010457_030--Hb_003175_010 Hb_007904_200--Hb_000010_330 Hb_007904_200--Hb_000451_010 Hb_000125_130 Hb_000125_130 Hb_007904_200--Hb_000125_130 Hb_003195_070 Hb_003195_070 Hb_007904_200--Hb_003195_070 Hb_001047_030 Hb_001047_030 Hb_007904_200--Hb_001047_030 Hb_011671_240--Hb_000451_010 Hb_000019_030 Hb_000019_030 Hb_011671_240--Hb_000019_030 Hb_000618_040 Hb_000618_040 Hb_011671_240--Hb_000618_040 Hb_001575_090 Hb_001575_090 Hb_011671_240--Hb_001575_090 Hb_004907_080 Hb_004907_080 Hb_011671_240--Hb_004907_080 Hb_011671_240--Hb_019280_040 Hb_000451_010--Hb_000618_040 Hb_000451_010--Hb_004907_080 Hb_000451_010--Hb_000010_330 Hb_032208_090 Hb_032208_090 Hb_000451_010--Hb_032208_090 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_000010_330--Hb_048937_040 Hb_002506_020--Hb_003195_070 Hb_000025_140 Hb_000025_140 Hb_002506_020--Hb_000025_140 Hb_002506_020--Hb_000451_010 Hb_000395_170 Hb_000395_170 Hb_002506_020--Hb_000395_170 Hb_002506_020--Hb_048937_040 Hb_002506_020--Hb_007904_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1248 12.7711 26.1434 35.8462 36.1121 49.9496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8417 37.4958 36.4562 19.5105 10.9498

CAGE analysis