Hb_002232_130

Information

Type -
Description -
Location Contig2232: 65161-71008
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_130 0.0 - - -
2 Hb_000123_230 0.1158523717 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006816_220 0.1237175977 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
4 Hb_000342_100 0.1309986317 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
5 Hb_150651_040 0.1323281024 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
6 Hb_005391_040 0.1326830136 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 [Jatropha curcas]
7 Hb_002893_050 0.1346813575 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
8 Hb_002045_040 0.1353734075 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
9 Hb_001416_010 0.1362557212 - - Thioredoxin H-type, putative [Ricinus communis]
10 Hb_001140_370 0.1368172046 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
11 Hb_003106_220 0.1386713791 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
12 Hb_000630_060 0.140274828 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
13 Hb_000030_290 0.140298444 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
14 Hb_007317_150 0.1404597921 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
15 Hb_000373_120 0.1405059993 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
16 Hb_001016_030 0.1406954929 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
17 Hb_004117_010 0.141563508 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
18 Hb_002081_070 0.1424842489 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
19 Hb_181288_010 0.1427563209 - - rac-GTP binding protein, putative [Ricinus communis]
20 Hb_001269_610 0.1427791438 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_130 Hb_002232_130 Hb_000123_230 Hb_000123_230 Hb_002232_130--Hb_000123_230 Hb_006816_220 Hb_006816_220 Hb_002232_130--Hb_006816_220 Hb_000342_100 Hb_000342_100 Hb_002232_130--Hb_000342_100 Hb_150651_040 Hb_150651_040 Hb_002232_130--Hb_150651_040 Hb_005391_040 Hb_005391_040 Hb_002232_130--Hb_005391_040 Hb_002893_050 Hb_002893_050 Hb_002232_130--Hb_002893_050 Hb_182305_020 Hb_182305_020 Hb_000123_230--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_000123_230--Hb_000510_110 Hb_000630_060 Hb_000630_060 Hb_000123_230--Hb_000630_060 Hb_008175_040 Hb_008175_040 Hb_000123_230--Hb_008175_040 Hb_000123_230--Hb_006816_220 Hb_000454_050 Hb_000454_050 Hb_000123_230--Hb_000454_050 Hb_003398_130 Hb_003398_130 Hb_006816_220--Hb_003398_130 Hb_001234_080 Hb_001234_080 Hb_006816_220--Hb_001234_080 Hb_006816_220--Hb_000454_050 Hb_000109_090 Hb_000109_090 Hb_006816_220--Hb_000109_090 Hb_000251_070 Hb_000251_070 Hb_006816_220--Hb_000251_070 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_000342_100--Hb_002893_050 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000610_050 Hb_000610_050 Hb_000342_100--Hb_000610_050 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020 Hb_005245_080 Hb_005245_080 Hb_150651_040--Hb_005245_080 Hb_150651_040--Hb_005391_040 Hb_000529_030 Hb_000529_030 Hb_150651_040--Hb_000529_030 Hb_000457_180 Hb_000457_180 Hb_150651_040--Hb_000457_180 Hb_001279_080 Hb_001279_080 Hb_150651_040--Hb_001279_080 Hb_000465_390 Hb_000465_390 Hb_150651_040--Hb_000465_390 Hb_004734_040 Hb_004734_040 Hb_005391_040--Hb_004734_040 Hb_089995_010 Hb_089995_010 Hb_005391_040--Hb_089995_010 Hb_007894_060 Hb_007894_060 Hb_005391_040--Hb_007894_060 Hb_007928_030 Hb_007928_030 Hb_005391_040--Hb_007928_030 Hb_005391_040--Hb_000465_390 Hb_002893_050--Hb_000610_050 Hb_002893_050--Hb_024071_020 Hb_007875_030 Hb_007875_030 Hb_002893_050--Hb_007875_030 Hb_002893_050--Hb_001140_370 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114834 0.0357801 0.0643236 0.100174 0.127968 0.0543368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262526 0.206531 0.0484219 0.0928002 0.0539098

CAGE analysis