Hb_002232_150

Information

Type -
Description -
Location Contig2232: 109273-111783
Sequence    

Annotation

kegg
ID tcc:TCM_034641
description Squalene monooxygenase isoform 1
nr
ID XP_012072795.1
description PREDICTED: squalene monooxygenase-like [Jatropha curcas]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID A0A067KRJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06966 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_150 0.0 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
2 Hb_007846_040 0.2036271975 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
3 Hb_000270_210 0.2046264078 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
4 Hb_010531_050 0.2080369788 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
5 Hb_000640_150 0.2147377732 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
6 Hb_005464_030 0.2195360323 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_164458_010 0.2381273181 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_006269_040 0.2392389171 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
9 Hb_000928_150 0.2393176553 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001622_010 0.2414957348 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_084858_010 0.2454000823 - - Uncharacterized protein isoform 3 [Theobroma cacao]
12 Hb_005839_100 0.2458587098 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
13 Hb_000997_410 0.2467603984 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
14 Hb_116125_010 0.2569659013 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
15 Hb_143960_010 0.2584099433 - - -
16 Hb_128376_010 0.2599592644 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006615_100 0.2604539225 - - PREDICTED: uncharacterized protein LOC105640683 isoform X1 [Jatropha curcas]
18 Hb_000062_060 0.262171523 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
19 Hb_007481_030 0.2640593805 - - PREDICTED: uncharacterized protein LOC105628433 [Jatropha curcas]
20 Hb_010261_010 0.2653072937 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002232_150 Hb_002232_150 Hb_007846_040 Hb_007846_040 Hb_002232_150--Hb_007846_040 Hb_000270_210 Hb_000270_210 Hb_002232_150--Hb_000270_210 Hb_010531_050 Hb_010531_050 Hb_002232_150--Hb_010531_050 Hb_000640_150 Hb_000640_150 Hb_002232_150--Hb_000640_150 Hb_005464_030 Hb_005464_030 Hb_002232_150--Hb_005464_030 Hb_164458_010 Hb_164458_010 Hb_002232_150--Hb_164458_010 Hb_007846_040--Hb_000640_150 Hb_000003_390 Hb_000003_390 Hb_007846_040--Hb_000003_390 Hb_001907_100 Hb_001907_100 Hb_007846_040--Hb_001907_100 Hb_054885_020 Hb_054885_020 Hb_007846_040--Hb_054885_020 Hb_059641_010 Hb_059641_010 Hb_007846_040--Hb_059641_010 Hb_005389_110 Hb_005389_110 Hb_000270_210--Hb_005389_110 Hb_000270_210--Hb_000640_150 Hb_018344_010 Hb_018344_010 Hb_000270_210--Hb_018344_010 Hb_116125_010 Hb_116125_010 Hb_000270_210--Hb_116125_010 Hb_002735_040 Hb_002735_040 Hb_000270_210--Hb_002735_040 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_001622_010 Hb_001622_010 Hb_010531_050--Hb_001622_010 Hb_031527_070 Hb_031527_070 Hb_010531_050--Hb_031527_070 Hb_114984_010 Hb_114984_010 Hb_010531_050--Hb_114984_010 Hb_000984_250 Hb_000984_250 Hb_010531_050--Hb_000984_250 Hb_010531_050--Hb_005464_030 Hb_012404_040 Hb_012404_040 Hb_000640_150--Hb_012404_040 Hb_000640_150--Hb_000003_390 Hb_010261_010 Hb_010261_010 Hb_000640_150--Hb_010261_010 Hb_003157_010 Hb_003157_010 Hb_000640_150--Hb_003157_010 Hb_005464_030--Hb_001622_010 Hb_002196_010 Hb_002196_010 Hb_005464_030--Hb_002196_010 Hb_001865_040 Hb_001865_040 Hb_005464_030--Hb_001865_040 Hb_002027_380 Hb_002027_380 Hb_005464_030--Hb_002027_380 Hb_002326_070 Hb_002326_070 Hb_005464_030--Hb_002326_070 Hb_003025_050 Hb_003025_050 Hb_164458_010--Hb_003025_050 Hb_005839_140 Hb_005839_140 Hb_164458_010--Hb_005839_140 Hb_143960_010 Hb_143960_010 Hb_164458_010--Hb_143960_010 Hb_002997_160 Hb_002997_160 Hb_164458_010--Hb_002997_160 Hb_005260_040 Hb_005260_040 Hb_164458_010--Hb_005260_040 Hb_003780_090 Hb_003780_090 Hb_164458_010--Hb_003780_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.505058 0.394001 0.206062 0.128739 0.143624 0.380163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0242157 0 0.289929 0

CAGE analysis