Hb_002232_160

Information

Type -
Description -
Location Contig2232: 114420-120237
Sequence    

Annotation

kegg
ID rcu:RCOM_1381600
description Transaminase mtnE, putative (EC:2.6.1.1)
nr
ID XP_002522052.1
description Transaminase mtnE, putative [Ricinus communis]
swissprot
ID Q93ZN9
description LL-diaminopimelate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=DAP PE=1 SV=1
trembl
ID B9S7T6
description Transaminase mtnE, putative OS=Ricinus communis GN=RCOM_1381600 PE=3 SV=1
Gene Ontology
ID GO:0009570
description ll-diaminopimelate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23111: 114456-120326
cDNA
(Sanger)
(ID:Location)		 005_N14.ab1: 115232-119988

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_160 0.0 - - Transaminase mtnE, putative [Ricinus communis]
2 Hb_000890_080 0.1079806587 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
3 Hb_000070_110 0.1085462799 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
4 Hb_003440_020 0.1086011718 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002529_090 0.1096965779 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
6 Hb_005015_110 0.1111242394 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
7 Hb_001564_070 0.1220107306 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
8 Hb_001040_150 0.127136396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004291_040 0.127839943 - - hexokinase [Manihot esculenta]
10 Hb_180378_010 0.1279257848 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
11 Hb_000465_150 0.1322069816 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
12 Hb_005218_080 0.1326328844 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_034083_020 0.1353338948 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007416_110 0.1384346232 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
15 Hb_002281_020 0.1396557115 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
16 Hb_004348_040 0.1418124655 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
17 Hb_001571_060 0.1418744228 - - PREDICTED: uncharacterized protein LOC105643976 [Jatropha curcas]
18 Hb_002900_110 0.1430695548 - - amino acid transporter, putative [Ricinus communis]
19 Hb_000139_340 0.1431824114 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008147_080 0.1433415513 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_160 Hb_002232_160 Hb_000890_080 Hb_000890_080 Hb_002232_160--Hb_000890_080 Hb_000070_110 Hb_000070_110 Hb_002232_160--Hb_000070_110 Hb_003440_020 Hb_003440_020 Hb_002232_160--Hb_003440_020 Hb_002529_090 Hb_002529_090 Hb_002232_160--Hb_002529_090 Hb_005015_110 Hb_005015_110 Hb_002232_160--Hb_005015_110 Hb_001564_070 Hb_001564_070 Hb_002232_160--Hb_001564_070 Hb_000890_080--Hb_003440_020 Hb_004348_040 Hb_004348_040 Hb_000890_080--Hb_004348_040 Hb_000890_080--Hb_000070_110 Hb_000890_080--Hb_002529_090 Hb_007416_110 Hb_007416_110 Hb_000890_080--Hb_007416_110 Hb_000130_200 Hb_000130_200 Hb_000070_110--Hb_000130_200 Hb_000070_110--Hb_002529_090 Hb_178968_080 Hb_178968_080 Hb_000070_110--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_000070_110--Hb_000032_600 Hb_000358_020 Hb_000358_020 Hb_003440_020--Hb_000358_020 Hb_000909_080 Hb_000909_080 Hb_003440_020--Hb_000909_080 Hb_005218_080 Hb_005218_080 Hb_003440_020--Hb_005218_080 Hb_055690_010 Hb_055690_010 Hb_003440_020--Hb_055690_010 Hb_106890_010 Hb_106890_010 Hb_003440_020--Hb_106890_010 Hb_000560_040 Hb_000560_040 Hb_002529_090--Hb_000560_040 Hb_002529_090--Hb_003440_020 Hb_002529_090--Hb_004348_040 Hb_002529_090--Hb_000130_200 Hb_000465_150 Hb_000465_150 Hb_005015_110--Hb_000465_150 Hb_180378_010 Hb_180378_010 Hb_005015_110--Hb_180378_010 Hb_001571_060 Hb_001571_060 Hb_005015_110--Hb_001571_060 Hb_002486_080 Hb_002486_080 Hb_005015_110--Hb_002486_080 Hb_000139_340 Hb_000139_340 Hb_005015_110--Hb_000139_340 Hb_005015_110--Hb_007416_110 Hb_001504_060 Hb_001504_060 Hb_001564_070--Hb_001504_060 Hb_000125_180 Hb_000125_180 Hb_001564_070--Hb_000125_180 Hb_000922_260 Hb_000922_260 Hb_001564_070--Hb_000922_260 Hb_005854_040 Hb_005854_040 Hb_001564_070--Hb_005854_040 Hb_004291_040 Hb_004291_040 Hb_001564_070--Hb_004291_040 Hb_012325_010 Hb_012325_010 Hb_001564_070--Hb_012325_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69438 5.7006 14.1291 10.8902 1.59301 2.1659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.70567 8.78098 5.69815 23.901 24.3763

CAGE analysis