Hb_002232_180

Information

Type -
Description -
Location Contig2232: 127377-133104
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29490g
description POPTRDRAFT_707478; CBS domain-containing family protein
nr
ID XP_011030269.1
description PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
swissprot
ID Q9ZQR4
description DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2
trembl
ID B9GIP7
description CBS domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s29490g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23115: 127628-129547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_180 0.0 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
2 Hb_007178_010 0.0528210342 - - pseudo-hevein [Hevea brasiliensis]
3 Hb_007810_040 0.0735055749 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
4 Hb_002067_160 0.0852528807 - - Protein MLO, putative [Ricinus communis]
5 Hb_002609_260 0.0861075404 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_004738_090 0.0890024959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005488_100 0.0895421695 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
8 Hb_003906_120 0.0896631698 - - -
9 Hb_010931_100 0.0902922573 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
10 Hb_002989_080 0.0922778981 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
11 Hb_003906_110 0.0950186087 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
12 Hb_000264_190 0.0990322659 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
13 Hb_017134_040 0.1005039273 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
14 Hb_095397_010 0.1027598401 - - hypothetical protein 25 [Hevea brasiliensis]
15 Hb_004545_150 0.1029898992 - - PREDICTED: paramyosin [Jatropha curcas]
16 Hb_011609_190 0.1055234918 - - 14-3-3 protein 2 [Hevea brasiliensis]
17 Hb_000249_110 0.1056144467 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
18 Hb_005730_020 0.106119765 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
19 Hb_009662_030 0.1072450577 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
20 Hb_002450_050 0.1073441057 - - PREDICTED: geraniol 8-hydroxylase-like [Solanum lycopersicum]

Gene co-expression network

sample Hb_002232_180 Hb_002232_180 Hb_007178_010 Hb_007178_010 Hb_002232_180--Hb_007178_010 Hb_007810_040 Hb_007810_040 Hb_002232_180--Hb_007810_040 Hb_002067_160 Hb_002067_160 Hb_002232_180--Hb_002067_160 Hb_002609_260 Hb_002609_260 Hb_002232_180--Hb_002609_260 Hb_004738_090 Hb_004738_090 Hb_002232_180--Hb_004738_090 Hb_005488_100 Hb_005488_100 Hb_002232_180--Hb_005488_100 Hb_007178_010--Hb_007810_040 Hb_007178_010--Hb_002067_160 Hb_007178_010--Hb_005488_100 Hb_003906_110 Hb_003906_110 Hb_007178_010--Hb_003906_110 Hb_010931_100 Hb_010931_100 Hb_007178_010--Hb_010931_100 Hb_003304_080 Hb_003304_080 Hb_007810_040--Hb_003304_080 Hb_002078_040 Hb_002078_040 Hb_007810_040--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_007810_040--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_007810_040--Hb_043637_010 Hb_000085_340 Hb_000085_340 Hb_002067_160--Hb_000085_340 Hb_002067_160--Hb_005488_100 Hb_002067_160--Hb_004738_090 Hb_026048_090 Hb_026048_090 Hb_002067_160--Hb_026048_090 Hb_000264_190 Hb_000264_190 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005730_020 Hb_005730_020 Hb_002609_260--Hb_005730_020 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_000563_540 Hb_000563_540 Hb_002609_260--Hb_000563_540 Hb_004738_090--Hb_000085_340 Hb_004738_090--Hb_000264_190 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_005488_100--Hb_010931_100 Hb_005488_100--Hb_000264_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.899 2.86108 1.48933 7.29526 116.017 91.2637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.4351 49.3554 71.6206 13.6693 1.27815

CAGE analysis