Hb_002232_280

Information

Type -
Description -
Location Contig2232: 212529-218442
Sequence    

Annotation

kegg
ID rcu:RCOM_1053730
description ATP-binding cassette transporter, putative (EC:3.6.3.28 3.6.3.31)
nr
ID XP_012076653.1
description PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
swissprot
ID Q76CU2
description Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1
trembl
ID B9RJZ6
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1053730 PE=4 SV=1
Gene Ontology
ID GO:0016020
description pleiotropic drug resistance protein 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_280 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
2 Hb_000390_220 0.1726088707 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
3 Hb_001662_030 0.1798048137 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
4 Hb_156144_030 0.1939891194 - - hypothetical protein RCOM_0187400 [Ricinus communis]
5 Hb_014720_170 0.2024922416 - - glutaredoxin-1, grx1, putative [Ricinus communis]
6 Hb_075449_020 0.2073352142 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
7 Hb_000904_130 0.2166860173 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
8 Hb_000987_130 0.216951668 - - -
9 Hb_007645_120 0.2230760292 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
10 Hb_001189_130 0.2240495924 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
11 Hb_000826_060 0.2240674189 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
12 Hb_079733_010 0.2242292585 - - -
13 Hb_002928_160 0.2245432562 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
14 Hb_000152_510 0.2256614027 - - kinase, putative [Ricinus communis]
15 Hb_000173_150 0.2269372505 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
16 Hb_007083_010 0.2274927083 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
17 Hb_000336_110 0.2285162144 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
18 Hb_003228_030 0.2300470815 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
19 Hb_000538_010 0.2301640352 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
20 Hb_000258_120 0.2305459636 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_280 Hb_002232_280 Hb_000390_220 Hb_000390_220 Hb_002232_280--Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_002232_280--Hb_001662_030 Hb_156144_030 Hb_156144_030 Hb_002232_280--Hb_156144_030 Hb_014720_170 Hb_014720_170 Hb_002232_280--Hb_014720_170 Hb_075449_020 Hb_075449_020 Hb_002232_280--Hb_075449_020 Hb_000904_130 Hb_000904_130 Hb_002232_280--Hb_000904_130 Hb_000390_220--Hb_001662_030 Hb_000390_220--Hb_075449_020 Hb_001189_130 Hb_001189_130 Hb_000390_220--Hb_001189_130 Hb_025306_010 Hb_025306_010 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001662_030--Hb_001189_130 Hb_001662_030--Hb_075449_020 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_007951_100 Hb_007951_100 Hb_156144_030--Hb_007951_100 Hb_156144_030--Hb_000953_030 Hb_001946_240 Hb_001946_240 Hb_156144_030--Hb_001946_240 Hb_000920_280 Hb_000920_280 Hb_156144_030--Hb_000920_280 Hb_000359_330 Hb_000359_330 Hb_156144_030--Hb_000359_330 Hb_001473_080 Hb_001473_080 Hb_156144_030--Hb_001473_080 Hb_007083_010 Hb_007083_010 Hb_014720_170--Hb_007083_010 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_002292_010 Hb_002292_010 Hb_014720_170--Hb_002292_010 Hb_002026_140 Hb_002026_140 Hb_014720_170--Hb_002026_140 Hb_000504_170 Hb_000504_170 Hb_014720_170--Hb_000504_170 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_006346_040 Hb_006346_040 Hb_000904_130--Hb_006346_040 Hb_185516_010 Hb_185516_010 Hb_000904_130--Hb_185516_010 Hb_001477_070 Hb_001477_070 Hb_000904_130--Hb_001477_070 Hb_031711_010 Hb_031711_010 Hb_000904_130--Hb_031711_010 Hb_002681_060 Hb_002681_060 Hb_000904_130--Hb_002681_060 Hb_001171_070 Hb_001171_070 Hb_000904_130--Hb_001171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.257188 0.280116 0.129753 0.116068 0.292107 0.0420704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760964 0.0598854 0.0328601 0.0237194 0

CAGE analysis