Hb_002232_290

Information

Type -
Description -
Location Contig2232: 222924-228730
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23118: 226413-227121 , PASA_asmbl_23119: 226372-227121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_290 0.0 - - -
2 Hb_138600_010 0.1674788273 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
3 Hb_031862_170 0.1720107498 - - immunophilin, putative [Ricinus communis]
4 Hb_001691_050 0.1874969641 - - -
5 Hb_005568_070 0.188334503 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
6 Hb_008147_030 0.1885863306 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
7 Hb_029510_010 0.1927240791 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
8 Hb_043655_010 0.1994717063 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
9 Hb_004102_130 0.2005564697 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002493_030 0.2119614242 - - -
11 Hb_002234_220 0.2159827225 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
12 Hb_088542_010 0.2165530513 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_000018_160 0.2168236199 - - nitrate transporter, putative [Ricinus communis]
14 Hb_073212_010 0.2170820465 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
15 Hb_107039_010 0.2196440551 - - Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]
16 Hb_000590_080 0.2223011853 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
17 Hb_172256_010 0.2294620355 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_141838_010 0.23124413 - - -
19 Hb_000176_170 0.231264911 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
20 Hb_104812_030 0.2334416821 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]

Gene co-expression network

sample Hb_002232_290 Hb_002232_290 Hb_138600_010 Hb_138600_010 Hb_002232_290--Hb_138600_010 Hb_031862_170 Hb_031862_170 Hb_002232_290--Hb_031862_170 Hb_001691_050 Hb_001691_050 Hb_002232_290--Hb_001691_050 Hb_005568_070 Hb_005568_070 Hb_002232_290--Hb_005568_070 Hb_008147_030 Hb_008147_030 Hb_002232_290--Hb_008147_030 Hb_029510_010 Hb_029510_010 Hb_002232_290--Hb_029510_010 Hb_138600_010--Hb_029510_010 Hb_000163_280 Hb_000163_280 Hb_138600_010--Hb_000163_280 Hb_088542_010 Hb_088542_010 Hb_138600_010--Hb_088542_010 Hb_004102_130 Hb_004102_130 Hb_138600_010--Hb_004102_130 Hb_000250_080 Hb_000250_080 Hb_138600_010--Hb_000250_080 Hb_031862_170--Hb_005568_070 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_000590_080 Hb_000590_080 Hb_031862_170--Hb_000590_080 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460 Hb_073212_010 Hb_073212_010 Hb_001691_050--Hb_073212_010 Hb_002493_030 Hb_002493_030 Hb_001691_050--Hb_002493_030 Hb_001691_050--Hb_088542_010 Hb_043655_010 Hb_043655_010 Hb_001691_050--Hb_043655_010 Hb_007634_020 Hb_007634_020 Hb_001691_050--Hb_007634_020 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_000548_010 Hb_000548_010 Hb_008147_030--Hb_000548_010 Hb_001268_230 Hb_001268_230 Hb_008147_030--Hb_001268_230 Hb_141838_010 Hb_141838_010 Hb_008147_030--Hb_141838_010 Hb_003320_030 Hb_003320_030 Hb_008147_030--Hb_003320_030 Hb_008147_030--Hb_031862_170 Hb_004460_020 Hb_004460_020 Hb_008147_030--Hb_004460_020 Hb_000101_210 Hb_000101_210 Hb_029510_010--Hb_000101_210 Hb_029510_010--Hb_088542_010 Hb_029510_010--Hb_000590_080 Hb_029510_010--Hb_031862_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.4514 11.5544 0.778441 5.62191 113.152 51.1186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.452875 0.661346 30.824 5.12172 3.07319

CAGE analysis