Hb_002232_300

Information

Type -
Description -
Location Contig2232: 228016-230736
Sequence    

Annotation

kegg
ID rcu:RCOM_0402510
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002531902.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID B9T0Y3
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_0402510 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23120: 228549-228975 , PASA_asmbl_23121: 229341-230512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_300 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_001767_040 0.2389500781 - - dehydroascorbate reductase, putative [Ricinus communis]
3 Hb_000684_130 0.2403564335 - - -
4 Hb_002475_120 0.2446855706 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_005568_100 0.2552196956 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
6 Hb_010521_020 0.2582327153 - - -
7 Hb_054436_010 0.2671490349 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
8 Hb_007603_020 0.2708834891 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
9 Hb_114638_010 0.2755598613 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
10 Hb_002843_090 0.2765567295 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
11 Hb_001021_160 0.279428666 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
12 Hb_001944_030 0.2860825024 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
13 Hb_091761_010 0.2876330556 - - Rhomboid protein, putative [Ricinus communis]
14 Hb_006816_330 0.2878299611 - - exonuclease, putative [Ricinus communis]
15 Hb_004055_110 0.2914905304 - - PREDICTED: uncharacterized protein LOC105631442 isoform X1 [Jatropha curcas]
16 Hb_002092_110 0.2925128385 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
17 Hb_001191_130 0.2962936672 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic [Jatropha curcas]
18 Hb_001269_310 0.2965614299 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
19 Hb_019592_010 0.2975823516 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
20 Hb_009265_050 0.2982072996 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]

Gene co-expression network

sample Hb_002232_300 Hb_002232_300 Hb_001767_040 Hb_001767_040 Hb_002232_300--Hb_001767_040 Hb_000684_130 Hb_000684_130 Hb_002232_300--Hb_000684_130 Hb_002475_120 Hb_002475_120 Hb_002232_300--Hb_002475_120 Hb_005568_100 Hb_005568_100 Hb_002232_300--Hb_005568_100 Hb_010521_020 Hb_010521_020 Hb_002232_300--Hb_010521_020 Hb_054436_010 Hb_054436_010 Hb_002232_300--Hb_054436_010 Hb_007603_020 Hb_007603_020 Hb_001767_040--Hb_007603_020 Hb_000997_150 Hb_000997_150 Hb_001767_040--Hb_000997_150 Hb_000189_430 Hb_000189_430 Hb_001767_040--Hb_000189_430 Hb_001269_310 Hb_001269_310 Hb_001767_040--Hb_001269_310 Hb_001195_190 Hb_001195_190 Hb_001767_040--Hb_001195_190 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_013399_080 Hb_013399_080 Hb_000684_130--Hb_013399_080 Hb_005843_160 Hb_005843_160 Hb_000684_130--Hb_005843_160 Hb_002863_090 Hb_002863_090 Hb_000684_130--Hb_002863_090 Hb_019592_010 Hb_019592_010 Hb_000684_130--Hb_019592_010 Hb_003872_010 Hb_003872_010 Hb_000684_130--Hb_003872_010 Hb_000684_130--Hb_097646_010 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_012586_050 Hb_012586_050 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_014919_020 Hb_014919_020 Hb_005568_100--Hb_014919_020 Hb_005568_100--Hb_010521_020 Hb_000789_130 Hb_000789_130 Hb_005568_100--Hb_000789_130 Hb_005548_030 Hb_005548_030 Hb_005568_100--Hb_005548_030 Hb_001944_030 Hb_001944_030 Hb_005568_100--Hb_001944_030 Hb_010521_030 Hb_010521_030 Hb_010521_020--Hb_010521_030 Hb_010521_020--Hb_001195_190 Hb_010521_020--Hb_000789_130 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_004296_010 Hb_004296_010 Hb_010521_020--Hb_004296_010 Hb_005527_080 Hb_005527_080 Hb_054436_010--Hb_005527_080 Hb_054436_010--Hb_149838_010 Hb_114984_010 Hb_114984_010 Hb_054436_010--Hb_114984_010 Hb_005517_010 Hb_005517_010 Hb_054436_010--Hb_005517_010 Hb_002783_020 Hb_002783_020 Hb_054436_010--Hb_002783_020 Hb_004657_090 Hb_004657_090 Hb_054436_010--Hb_004657_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6232 2.39703 11.4601 5.11075 11.4926 1.45612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0228834 3.61972 0.282927 4.75132

CAGE analysis