Hb_002232_310

Information

Type -
Description -
Location Contig2232: 231654-235006
Sequence    

Annotation

kegg
ID rcu:RCOM_1381530
description hypothetical protein
nr
ID XP_012074533.1
description PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09882 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23122: 231740-232591 , PASA_asmbl_23123: 233424-234348 , PASA_asmbl_23124: 233427-234348 , PASA_asmbl_23125: 234533-235147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_310 0.0 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
2 Hb_001755_040 0.0868270082 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
3 Hb_003935_090 0.0913240293 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
4 Hb_010705_040 0.1007276654 - - PREDICTED: kinesin-4 [Jatropha curcas]
5 Hb_003109_010 0.1046759151 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
6 Hb_004109_100 0.1061150281 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
7 Hb_007574_020 0.1080943912 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
8 Hb_001761_010 0.1111753854 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
9 Hb_000265_100 0.1137134214 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
10 Hb_014497_070 0.1242341378 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
11 Hb_023344_100 0.1251836908 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
12 Hb_000936_030 0.1257942045 - - hypothetical protein RCOM_0615680 [Ricinus communis]
13 Hb_012753_150 0.1292894987 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
14 Hb_002243_030 0.1321562333 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
15 Hb_001501_070 0.1322287653 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
16 Hb_004963_020 0.1325297783 - - PREDICTED: patellin-4 [Populus euphratica]
17 Hb_002205_180 0.1331581829 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
18 Hb_000020_040 0.1348867614 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
19 Hb_008725_240 0.1357550816 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000028_530 0.1366667479 - - Protein regulator of cytokinesis, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_310 Hb_002232_310 Hb_001755_040 Hb_001755_040 Hb_002232_310--Hb_001755_040 Hb_003935_090 Hb_003935_090 Hb_002232_310--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_004109_100 Hb_004109_100 Hb_002232_310--Hb_004109_100 Hb_007574_020 Hb_007574_020 Hb_002232_310--Hb_007574_020 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_001755_040--Hb_007574_020 Hb_001755_040--Hb_003935_090 Hb_001755_040--Hb_010705_040 Hb_003935_090--Hb_007574_020 Hb_003935_090--Hb_004109_100 Hb_012055_080 Hb_012055_080 Hb_003935_090--Hb_012055_080 Hb_023344_100 Hb_023344_100 Hb_003935_090--Hb_023344_100 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_000441_210 Hb_000441_210 Hb_010705_040--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_010705_040--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_010705_040--Hb_004102_090 Hb_002205_180 Hb_002205_180 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_033041_010 Hb_033041_010 Hb_003109_010--Hb_033041_010 Hb_007632_080 Hb_007632_080 Hb_003109_010--Hb_007632_080 Hb_001584_360 Hb_001584_360 Hb_003109_010--Hb_001584_360 Hb_101133_050 Hb_101133_050 Hb_003109_010--Hb_101133_050 Hb_007943_180 Hb_007943_180 Hb_003109_010--Hb_007943_180 Hb_005568_140 Hb_005568_140 Hb_004109_100--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_004109_100--Hb_002918_220 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_007574_020--Hb_004109_100 Hb_007574_020--Hb_005568_140 Hb_007574_020--Hb_002243_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.160569 0.215967 6.60362 2.01685 0.114098 0.0491031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0412683 0.0811802 0.0925587 0.271096 0.790991

CAGE analysis